Gene : Cagra.4849s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13040 - AUTOPHAGY PROTEIN 5 Genomic Order:  5
Name:  ? Cagra.4849s0005 Secondary Identifier:  ? PAC:28898027
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4849s0005 0.5kb upstream 0.5kb upstream 3596 true Scaffold4849: 18747-22342 Capsella grandiflora
Cagra.4849s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold4849: 18747-19246 Capsella grandiflora
Cagra.4849s0005 0.5kb downstream 0.5kb downstream 3596 true Scaffold4849: 19247-22842 Capsella grandiflora
Cagra.4849s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold4849: 22343-22842 Capsella grandiflora
Cagra.4849s0005 1.0kb upstream 1.0kb upstream 4096 true Scaffold4849: 18247-22342 Capsella grandiflora
Cagra.4849s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold4849: 18247-19246 Capsella grandiflora
Cagra.4849s0005 1.0kb downstream 1.0kb downstream 4096 true Scaffold4849: 19247-23342 Capsella grandiflora
Cagra.4849s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold4849: 22343-23342 Capsella grandiflora
Cagra.4849s0005 2.0kb upstream 2.0kb upstream 5096 true Scaffold4849: 17247-22342 Capsella grandiflora
Cagra.4849s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold4849: 17247-19246 Capsella grandiflora
Cagra.4849s0005 2.0kb downstream 2.0kb downstream 5096 true Scaffold4849: 19247-24342 Capsella grandiflora
Cagra.4849s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold4849: 22343-24342 Capsella grandiflora
Cagra.4849s0005 5.0kb upstream 5.0kb upstream 8096 true Scaffold4849: 14247-22342 Capsella grandiflora
Cagra.4849s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold4849: 14247-19246 Capsella grandiflora
Cagra.4849s0005 5.0kb downstream 5.0kb downstream 8096 true Scaffold4849: 19247-27342 Capsella grandiflora
Cagra.4849s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold4849: 22343-27342 Capsella grandiflora
Cagra.4849s0005 10.0kb upstream 10.0kb upstream 13096 true Scaffold4849: 9247-22342 Capsella grandiflora
Cagra.4849s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold4849: 9247-19246 Capsella grandiflora
Cagra.4849s0005 10.0kb downstream 10.0kb downstream 13096 true Scaffold4849: 19247-32342 Capsella grandiflora
Cagra.4849s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold4849: 22343-32342 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361442 5261 Brassicaceae View MSA
123838673 5264 Brassicales-Malvales View MSA
124346411 5266 SBM View MSA
124243559 5268 Malvidae View MSA
124066677 5270 Rosid View MSA
123746319 5271 Pentapetalae View MSA
122787337 5272 Eudicot View MSA
122043492 5273 Angiosperm View MSA
121349357 5274 Embryophyte View MSA
123424338 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain