Gene : Cagra.4878s0003 C. grandiflora v1.1
Defline:  (1 of 1) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  3
Name:  ? Cagra.4878s0003 Secondary Identifier:  ? PAC:28908168
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4878s0003 0.5kb upstream 0.5kb upstream 5549 true Scaffold4878: 7727-13275 Capsella grandiflora
Cagra.4878s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4878: 12776-13275 Capsella grandiflora
Cagra.4878s0003 0.5kb downstream 0.5kb downstream 5549 true Scaffold4878: 7227-12775 Capsella grandiflora
Cagra.4878s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4878: 7227-7726 Capsella grandiflora
Cagra.4878s0003 1.0kb upstream 1.0kb upstream 6049 true Scaffold4878: 7727-13775 Capsella grandiflora
Cagra.4878s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4878: 12776-13775 Capsella grandiflora
Cagra.4878s0003 1.0kb downstream 1.0kb downstream 6049 true Scaffold4878: 6727-12775 Capsella grandiflora
Cagra.4878s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4878: 6727-7726 Capsella grandiflora
Cagra.4878s0003 2.0kb upstream 2.0kb upstream 7049 true Scaffold4878: 7727-14775 Capsella grandiflora
Cagra.4878s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4878: 12776-14775 Capsella grandiflora
Cagra.4878s0003 2.0kb downstream 2.0kb downstream 7049 true Scaffold4878: 5727-12775 Capsella grandiflora
Cagra.4878s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4878: 5727-7726 Capsella grandiflora
Cagra.4878s0003 5.0kb upstream 5.0kb upstream 10049 true Scaffold4878: 7727-17775 Capsella grandiflora
Cagra.4878s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold4878: 12776-17775 Capsella grandiflora
Cagra.4878s0003 5.0kb downstream 5.0kb downstream 10049 true Scaffold4878: 2727-12775 Capsella grandiflora
Cagra.4878s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4878: 2727-7726 Capsella grandiflora
Cagra.4878s0003 10.0kb upstream 10.0kb upstream 15049 true Scaffold4878: 7727-22775 Capsella grandiflora
Cagra.4878s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold4878: 12776-22775 Capsella grandiflora
Cagra.4878s0003 10.0kb downstream 10.0kb downstream 12775 true Scaffold4878: 1-12775 Capsella grandiflora
Cagra.4878s0003 10.0kb downstream 10.0kb downstream 7726 false Scaffold4878: 1-7726 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368067 5261 Brassicaceae View MSA
123833962 5264 Brassicales-Malvales View MSA
124345504 5266 SBM View MSA
124240318 5268 Malvidae View MSA
124050381 5270 Rosid View MSA
123750218 5271 Pentapetalae View MSA
122787219 5272 Eudicot View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain