Gene : Cagra.4553s0030 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12302:SF2 - STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  30
Name:  ? Cagra.4553s0030 Secondary Identifier:  ? PAC:28907118
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4553s0030 0.5kb upstream 0.5kb upstream 5856 true Scaffold4553: 123746-129601 Capsella grandiflora
Cagra.4553s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold4553: 129102-129601 Capsella grandiflora
Cagra.4553s0030 0.5kb downstream 0.5kb downstream 5856 true Scaffold4553: 123246-129101 Capsella grandiflora
Cagra.4553s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold4553: 123246-123745 Capsella grandiflora
Cagra.4553s0030 1.0kb upstream 1.0kb upstream 6356 true Scaffold4553: 123746-130101 Capsella grandiflora
Cagra.4553s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold4553: 129102-130101 Capsella grandiflora
Cagra.4553s0030 1.0kb downstream 1.0kb downstream 6356 true Scaffold4553: 122746-129101 Capsella grandiflora
Cagra.4553s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold4553: 122746-123745 Capsella grandiflora
Cagra.4553s0030 2.0kb upstream 2.0kb upstream 7356 true Scaffold4553: 123746-131101 Capsella grandiflora
Cagra.4553s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold4553: 129102-131101 Capsella grandiflora
Cagra.4553s0030 2.0kb downstream 2.0kb downstream 7356 true Scaffold4553: 121746-129101 Capsella grandiflora
Cagra.4553s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold4553: 121746-123745 Capsella grandiflora
Cagra.4553s0030 5.0kb upstream 5.0kb upstream 10356 true Scaffold4553: 123746-134101 Capsella grandiflora
Cagra.4553s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold4553: 129102-134101 Capsella grandiflora
Cagra.4553s0030 5.0kb downstream 5.0kb downstream 10356 true Scaffold4553: 118746-129101 Capsella grandiflora
Cagra.4553s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold4553: 118746-123745 Capsella grandiflora
Cagra.4553s0030 10.0kb upstream 10.0kb upstream 15356 true Scaffold4553: 123746-139101 Capsella grandiflora
Cagra.4553s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold4553: 129102-139101 Capsella grandiflora
Cagra.4553s0030 10.0kb downstream 10.0kb downstream 15356 true Scaffold4553: 113746-129101 Capsella grandiflora
Cagra.4553s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold4553: 113746-123745 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368287 5261 Brassicaceae View MSA
123833003 5264 Brassicales-Malvales View MSA
124345847 5266 SBM View MSA
124253737 5268 Malvidae View MSA
124063512 5270 Rosid View MSA
123750143 5271 Pentapetalae View MSA
122792240 5272 Eudicot View MSA
122045842 5273 Angiosperm View MSA
121344100 5274 Embryophyte View MSA
123426864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain