Gene : Cagra.6369s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  6
Name:  ? Cagra.6369s0006 Secondary Identifier:  ? PAC:28913276
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-4361 Capsella grandiflora pathologic  
Cgrandiflora PWY-7270 Capsella grandiflora pathologic  
Cgrandiflora PWY-7528 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6369s0006 0.5kb upstream 0.5kb upstream 2167 true Scaffold6369: 28661-30827 Capsella grandiflora
Cagra.6369s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold6369: 30328-30827 Capsella grandiflora
Cagra.6369s0006 0.5kb downstream 0.5kb downstream 2167 true Scaffold6369: 28161-30327 Capsella grandiflora
Cagra.6369s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold6369: 28161-28660 Capsella grandiflora
Cagra.6369s0006 1.0kb upstream 1.0kb upstream 2667 true Scaffold6369: 28661-31327 Capsella grandiflora
Cagra.6369s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold6369: 30328-31327 Capsella grandiflora
Cagra.6369s0006 1.0kb downstream 1.0kb downstream 2667 true Scaffold6369: 27661-30327 Capsella grandiflora
Cagra.6369s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold6369: 27661-28660 Capsella grandiflora
Cagra.6369s0006 2.0kb upstream 2.0kb upstream 3667 true Scaffold6369: 28661-32327 Capsella grandiflora
Cagra.6369s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold6369: 30328-32327 Capsella grandiflora
Cagra.6369s0006 2.0kb downstream 2.0kb downstream 3667 true Scaffold6369: 26661-30327 Capsella grandiflora
Cagra.6369s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold6369: 26661-28660 Capsella grandiflora
Cagra.6369s0006 5.0kb upstream 5.0kb upstream 6667 true Scaffold6369: 28661-35327 Capsella grandiflora
Cagra.6369s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold6369: 30328-35327 Capsella grandiflora
Cagra.6369s0006 5.0kb downstream 5.0kb downstream 6667 true Scaffold6369: 23661-30327 Capsella grandiflora
Cagra.6369s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold6369: 23661-28660 Capsella grandiflora
Cagra.6369s0006 10.0kb upstream 10.0kb upstream 11667 true Scaffold6369: 28661-40327 Capsella grandiflora
Cagra.6369s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold6369: 30328-40327 Capsella grandiflora
Cagra.6369s0006 10.0kb downstream 10.0kb downstream 11667 true Scaffold6369: 18661-30327 Capsella grandiflora
Cagra.6369s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold6369: 18661-28660 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370454 5261 Brassicaceae View MSA
123834672 5264 Brassicales-Malvales View MSA
124342820 5266 SBM View MSA
124240096 5268 Malvidae View MSA
124070684 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain