Gene : Cagra.6181s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  3
Name:  ? Cagra.6181s0003 Secondary Identifier:  ? PAC:28919973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6181s0003 0.5kb upstream 0.5kb upstream 3236 true Scaffold6181: 16584-19819 Capsella grandiflora
Cagra.6181s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold6181: 19320-19819 Capsella grandiflora
Cagra.6181s0003 0.5kb downstream 0.5kb downstream 3236 true Scaffold6181: 16084-19319 Capsella grandiflora
Cagra.6181s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold6181: 16084-16583 Capsella grandiflora
Cagra.6181s0003 1.0kb upstream 1.0kb upstream 3736 true Scaffold6181: 16584-20319 Capsella grandiflora
Cagra.6181s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold6181: 19320-20319 Capsella grandiflora
Cagra.6181s0003 1.0kb downstream 1.0kb downstream 3736 true Scaffold6181: 15584-19319 Capsella grandiflora
Cagra.6181s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold6181: 15584-16583 Capsella grandiflora
Cagra.6181s0003 2.0kb upstream 2.0kb upstream 3932 true Scaffold6181: 16584-20515 Capsella grandiflora
Cagra.6181s0003 2.0kb upstream 2.0kb upstream 1196 false Scaffold6181: 19320-20515 Capsella grandiflora
Cagra.6181s0003 2.0kb downstream 2.0kb downstream 4736 true Scaffold6181: 14584-19319 Capsella grandiflora
Cagra.6181s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold6181: 14584-16583 Capsella grandiflora
Cagra.6181s0003 5.0kb upstream 5.0kb upstream 3932 true Scaffold6181: 16584-20515 Capsella grandiflora
Cagra.6181s0003 5.0kb upstream 5.0kb upstream 1196 false Scaffold6181: 19320-20515 Capsella grandiflora
Cagra.6181s0003 5.0kb downstream 5.0kb downstream 7736 true Scaffold6181: 11584-19319 Capsella grandiflora
Cagra.6181s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold6181: 11584-16583 Capsella grandiflora
Cagra.6181s0003 10.0kb upstream 10.0kb upstream 3932 true Scaffold6181: 16584-20515 Capsella grandiflora
Cagra.6181s0003 10.0kb upstream 10.0kb upstream 1196 false Scaffold6181: 19320-20515 Capsella grandiflora
Cagra.6181s0003 10.0kb downstream 10.0kb downstream 12736 true Scaffold6181: 6584-19319 Capsella grandiflora
Cagra.6181s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold6181: 6584-16583 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377880 5261 Brassicaceae View MSA
123838553 5264 Brassicales-Malvales View MSA
124337875 5266 SBM View MSA
124238414 5268 Malvidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain