Gene : Cagra.6170s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11999//PTHR11999:SF92 - GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE Genomic Order:  1
Name:  ? Cagra.6170s0001 Secondary Identifier:  ? PAC:28906168
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUDEG-I-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY0-1305 Capsella grandiflora pathologic  
Cgrandiflora PWY-4321 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6170s0001 0.5kb upstream 0.5kb upstream 4217 true Scaffold6170: 688-4904 Capsella grandiflora
Cagra.6170s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold6170: 688-1187 Capsella grandiflora
Cagra.6170s0001 0.5kb downstream 0.5kb downstream 4217 true Scaffold6170: 1188-5404 Capsella grandiflora
Cagra.6170s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold6170: 4905-5404 Capsella grandiflora
Cagra.6170s0001 1.0kb upstream 1.0kb upstream 4717 true Scaffold6170: 188-4904 Capsella grandiflora
Cagra.6170s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold6170: 188-1187 Capsella grandiflora
Cagra.6170s0001 1.0kb downstream 1.0kb downstream 4717 true Scaffold6170: 1188-5904 Capsella grandiflora
Cagra.6170s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold6170: 4905-5904 Capsella grandiflora
Cagra.6170s0001 2.0kb upstream 2.0kb upstream 4904 true Scaffold6170: 1-4904 Capsella grandiflora
Cagra.6170s0001 2.0kb upstream 2.0kb upstream 1187 false Scaffold6170: 1-1187 Capsella grandiflora
Cagra.6170s0001 2.0kb downstream 2.0kb downstream 5717 true Scaffold6170: 1188-6904 Capsella grandiflora
Cagra.6170s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold6170: 4905-6904 Capsella grandiflora
Cagra.6170s0001 5.0kb upstream 5.0kb upstream 4904 true Scaffold6170: 1-4904 Capsella grandiflora
Cagra.6170s0001 5.0kb upstream 5.0kb upstream 1187 false Scaffold6170: 1-1187 Capsella grandiflora
Cagra.6170s0001 5.0kb downstream 5.0kb downstream 8717 true Scaffold6170: 1188-9904 Capsella grandiflora
Cagra.6170s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold6170: 4905-9904 Capsella grandiflora
Cagra.6170s0001 10.0kb upstream 10.0kb upstream 4904 true Scaffold6170: 1-4904 Capsella grandiflora
Cagra.6170s0001 10.0kb upstream 10.0kb upstream 1187 false Scaffold6170: 1-1187 Capsella grandiflora
Cagra.6170s0001 10.0kb downstream 10.0kb downstream 13717 true Scaffold6170: 1188-14904 Capsella grandiflora
Cagra.6170s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold6170: 4905-14904 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380597 5261 Brassicaceae View MSA
123833803 5264 Brassicales-Malvales View MSA
124345167 5266 SBM View MSA
124252888 5268 Malvidae View MSA
124073926 5270 Rosid View MSA
123749296 5271 Pentapetalae View MSA
122788993 5272 Eudicot View MSA
122047192 5273 Angiosperm View MSA
121350824 5274 Embryophyte View MSA
123427084 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain