Gene : Cagra.6170s0012 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13301//PTHR13301:SF28 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  12
Name:  ? Cagra.6170s0012 Secondary Identifier:  ? PAC:28906171
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1001 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6170s0012 0.5kb upstream 0.5kb upstream 4925 true Scaffold6170: 32249-37173 Capsella grandiflora
Cagra.6170s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold6170: 36674-37173 Capsella grandiflora
Cagra.6170s0012 0.5kb downstream 0.5kb downstream 4925 true Scaffold6170: 31749-36673 Capsella grandiflora
Cagra.6170s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold6170: 31749-32248 Capsella grandiflora
Cagra.6170s0012 1.0kb upstream 1.0kb upstream 5425 true Scaffold6170: 32249-37673 Capsella grandiflora
Cagra.6170s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold6170: 36674-37673 Capsella grandiflora
Cagra.6170s0012 1.0kb downstream 1.0kb downstream 5425 true Scaffold6170: 31249-36673 Capsella grandiflora
Cagra.6170s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold6170: 31249-32248 Capsella grandiflora
Cagra.6170s0012 2.0kb upstream 2.0kb upstream 6425 true Scaffold6170: 32249-38673 Capsella grandiflora
Cagra.6170s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold6170: 36674-38673 Capsella grandiflora
Cagra.6170s0012 2.0kb downstream 2.0kb downstream 6425 true Scaffold6170: 30249-36673 Capsella grandiflora
Cagra.6170s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold6170: 30249-32248 Capsella grandiflora
Cagra.6170s0012 5.0kb upstream 5.0kb upstream 9425 true Scaffold6170: 32249-41673 Capsella grandiflora
Cagra.6170s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold6170: 36674-41673 Capsella grandiflora
Cagra.6170s0012 5.0kb downstream 5.0kb downstream 9425 true Scaffold6170: 27249-36673 Capsella grandiflora
Cagra.6170s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold6170: 27249-32248 Capsella grandiflora
Cagra.6170s0012 10.0kb upstream 10.0kb upstream 14425 true Scaffold6170: 32249-46673 Capsella grandiflora
Cagra.6170s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold6170: 36674-46673 Capsella grandiflora
Cagra.6170s0012 10.0kb downstream 10.0kb downstream 14425 true Scaffold6170: 22249-36673 Capsella grandiflora
Cagra.6170s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold6170: 22249-32248 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369978 5261 Brassicaceae View MSA
123836299 5264 Brassicales-Malvales View MSA
124345098 5266 SBM View MSA
124251673 5268 Malvidae View MSA
124065342 5270 Rosid View MSA
123753627 5271 Pentapetalae View MSA
122788990 5272 Eudicot View MSA
122047016 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain