Gene : Cagra.6011s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31707:SF35 - PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED Genomic Order:  20
Name:  ? Cagra.6011s0020 Secondary Identifier:  ? PAC:28895837
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6011s0020 0.5kb upstream 0.5kb upstream 2514 true Scaffold6011: 78079-80592 Capsella grandiflora
Cagra.6011s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold6011: 78079-78578 Capsella grandiflora
Cagra.6011s0020 0.5kb downstream 0.5kb downstream 2514 true Scaffold6011: 78579-81092 Capsella grandiflora
Cagra.6011s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold6011: 80593-81092 Capsella grandiflora
Cagra.6011s0020 1.0kb upstream 1.0kb upstream 3014 true Scaffold6011: 77579-80592 Capsella grandiflora
Cagra.6011s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold6011: 77579-78578 Capsella grandiflora
Cagra.6011s0020 1.0kb downstream 1.0kb downstream 3014 true Scaffold6011: 78579-81592 Capsella grandiflora
Cagra.6011s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold6011: 80593-81592 Capsella grandiflora
Cagra.6011s0020 2.0kb upstream 2.0kb upstream 4014 true Scaffold6011: 76579-80592 Capsella grandiflora
Cagra.6011s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold6011: 76579-78578 Capsella grandiflora
Cagra.6011s0020 2.0kb downstream 2.0kb downstream 4014 true Scaffold6011: 78579-82592 Capsella grandiflora
Cagra.6011s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold6011: 80593-82592 Capsella grandiflora
Cagra.6011s0020 5.0kb upstream 5.0kb upstream 7014 true Scaffold6011: 73579-80592 Capsella grandiflora
Cagra.6011s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold6011: 73579-78578 Capsella grandiflora
Cagra.6011s0020 5.0kb downstream 5.0kb downstream 7014 true Scaffold6011: 78579-85592 Capsella grandiflora
Cagra.6011s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold6011: 80593-85592 Capsella grandiflora
Cagra.6011s0020 10.0kb upstream 10.0kb upstream 12014 true Scaffold6011: 68579-80592 Capsella grandiflora
Cagra.6011s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold6011: 68579-78578 Capsella grandiflora
Cagra.6011s0020 10.0kb downstream 10.0kb downstream 12014 true Scaffold6011: 78579-90592 Capsella grandiflora
Cagra.6011s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold6011: 80593-90592 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367115 5261 Brassicaceae View MSA
123829161 5264 Brassicales-Malvales View MSA
124350444 5266 SBM View MSA
124244042 5268 Malvidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain