Gene : Cagra.6019s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR24095:SF178 - ACETATE--COA LIGASE ACS, CHLOROPLASTIC/GLYOXYSOMAL Genomic Order:  4
Name:  ? Cagra.6019s0004 Secondary Identifier:  ? PAC:28908232
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY66-21 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6019s0004 0.5kb upstream 0.5kb upstream 6457 true Scaffold6019: 7597-14053 Capsella grandiflora
Cagra.6019s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold6019: 13554-14053 Capsella grandiflora
Cagra.6019s0004 0.5kb downstream 0.5kb downstream 6457 true Scaffold6019: 7097-13553 Capsella grandiflora
Cagra.6019s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold6019: 7097-7596 Capsella grandiflora
Cagra.6019s0004 1.0kb upstream 1.0kb upstream 6957 true Scaffold6019: 7597-14553 Capsella grandiflora
Cagra.6019s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold6019: 13554-14553 Capsella grandiflora
Cagra.6019s0004 1.0kb downstream 1.0kb downstream 6957 true Scaffold6019: 6597-13553 Capsella grandiflora
Cagra.6019s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold6019: 6597-7596 Capsella grandiflora
Cagra.6019s0004 2.0kb upstream 2.0kb upstream 7957 true Scaffold6019: 7597-15553 Capsella grandiflora
Cagra.6019s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold6019: 13554-15553 Capsella grandiflora
Cagra.6019s0004 2.0kb downstream 2.0kb downstream 7957 true Scaffold6019: 5597-13553 Capsella grandiflora
Cagra.6019s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold6019: 5597-7596 Capsella grandiflora
Cagra.6019s0004 5.0kb upstream 5.0kb upstream 10957 true Scaffold6019: 7597-18553 Capsella grandiflora
Cagra.6019s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold6019: 13554-18553 Capsella grandiflora
Cagra.6019s0004 5.0kb downstream 5.0kb downstream 10957 true Scaffold6019: 2597-13553 Capsella grandiflora
Cagra.6019s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold6019: 2597-7596 Capsella grandiflora
Cagra.6019s0004 10.0kb upstream 10.0kb upstream 15957 true Scaffold6019: 7597-23553 Capsella grandiflora
Cagra.6019s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold6019: 13554-23553 Capsella grandiflora
Cagra.6019s0004 10.0kb downstream 10.0kb downstream 13553 true Scaffold6019: 1-13553 Capsella grandiflora
Cagra.6019s0004 10.0kb downstream 10.0kb downstream 7596 false Scaffold6019: 1-7596 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375220 5261 Brassicaceae View MSA
123831585 5264 Brassicales-Malvales View MSA
124346209 5266 SBM View MSA
124241658 5268 Malvidae View MSA
124065659 5270 Rosid View MSA
123746880 5271 Pentapetalae View MSA
122789146 5272 Eudicot View MSA
122041906 5273 Angiosperm View MSA
121351540 5274 Embryophyte View MSA
123424340 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain