Gene : Cagra.6066s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11504 - CYTOCHROME C OXIDASE POLYPEPTIDE VIA Genomic Order:  4
Name:  ? Cagra.6066s0004 Secondary Identifier:  ? PAC:28904785
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-7279 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6066s0004 0.5kb upstream 0.5kb upstream 1940 true Scaffold6066: 23788-25727 Capsella grandiflora
Cagra.6066s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold6066: 25228-25727 Capsella grandiflora
Cagra.6066s0004 0.5kb downstream 0.5kb downstream 1940 true Scaffold6066: 23288-25227 Capsella grandiflora
Cagra.6066s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold6066: 23288-23787 Capsella grandiflora
Cagra.6066s0004 1.0kb upstream 1.0kb upstream 2440 true Scaffold6066: 23788-26227 Capsella grandiflora
Cagra.6066s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold6066: 25228-26227 Capsella grandiflora
Cagra.6066s0004 1.0kb downstream 1.0kb downstream 2440 true Scaffold6066: 22788-25227 Capsella grandiflora
Cagra.6066s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold6066: 22788-23787 Capsella grandiflora
Cagra.6066s0004 2.0kb upstream 2.0kb upstream 3440 true Scaffold6066: 23788-27227 Capsella grandiflora
Cagra.6066s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold6066: 25228-27227 Capsella grandiflora
Cagra.6066s0004 2.0kb downstream 2.0kb downstream 3440 true Scaffold6066: 21788-25227 Capsella grandiflora
Cagra.6066s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold6066: 21788-23787 Capsella grandiflora
Cagra.6066s0004 5.0kb upstream 5.0kb upstream 6440 true Scaffold6066: 23788-30227 Capsella grandiflora
Cagra.6066s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold6066: 25228-30227 Capsella grandiflora
Cagra.6066s0004 5.0kb downstream 5.0kb downstream 6440 true Scaffold6066: 18788-25227 Capsella grandiflora
Cagra.6066s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold6066: 18788-23787 Capsella grandiflora
Cagra.6066s0004 10.0kb upstream 10.0kb upstream 11440 true Scaffold6066: 23788-35227 Capsella grandiflora
Cagra.6066s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold6066: 25228-35227 Capsella grandiflora
Cagra.6066s0004 10.0kb downstream 10.0kb downstream 11440 true Scaffold6066: 13788-25227 Capsella grandiflora
Cagra.6066s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold6066: 13788-23787 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360303 5261 Brassicaceae View MSA
123835033 5264 Brassicales-Malvales View MSA
124338719 5266 SBM View MSA
124238315 5268 Malvidae View MSA
124061268 5270 Rosid View MSA
123742807 5271 Pentapetalae View MSA
122787280 5272 Eudicot View MSA
122043726 5273 Angiosperm View MSA
121349010 5274 Embryophyte View MSA
123424511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain