Gene : Cagra.5804s0002 C. grandiflora v1.1
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  2
Name:  ? Cagra.5804s0002 Secondary Identifier:  ? PAC:28910658
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora LEUSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5804s0002 0.5kb upstream 0.5kb upstream 3566 true Scaffold5804: 6534-10099 Capsella grandiflora
Cagra.5804s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5804: 9600-10099 Capsella grandiflora
Cagra.5804s0002 0.5kb downstream 0.5kb downstream 3566 true Scaffold5804: 6034-9599 Capsella grandiflora
Cagra.5804s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5804: 6034-6533 Capsella grandiflora
Cagra.5804s0002 1.0kb upstream 1.0kb upstream 4066 true Scaffold5804: 6534-10599 Capsella grandiflora
Cagra.5804s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5804: 9600-10599 Capsella grandiflora
Cagra.5804s0002 1.0kb downstream 1.0kb downstream 4066 true Scaffold5804: 5534-9599 Capsella grandiflora
Cagra.5804s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5804: 5534-6533 Capsella grandiflora
Cagra.5804s0002 2.0kb upstream 2.0kb upstream 5066 true Scaffold5804: 6534-11599 Capsella grandiflora
Cagra.5804s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5804: 9600-11599 Capsella grandiflora
Cagra.5804s0002 2.0kb downstream 2.0kb downstream 5066 true Scaffold5804: 4534-9599 Capsella grandiflora
Cagra.5804s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5804: 4534-6533 Capsella grandiflora
Cagra.5804s0002 5.0kb upstream 5.0kb upstream 8066 true Scaffold5804: 6534-14599 Capsella grandiflora
Cagra.5804s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold5804: 9600-14599 Capsella grandiflora
Cagra.5804s0002 5.0kb downstream 5.0kb downstream 8066 true Scaffold5804: 1534-9599 Capsella grandiflora
Cagra.5804s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5804: 1534-6533 Capsella grandiflora
Cagra.5804s0002 10.0kb upstream 10.0kb upstream 9128 true Scaffold5804: 6534-15661 Capsella grandiflora
Cagra.5804s0002 10.0kb upstream 10.0kb upstream 6062 false Scaffold5804: 9600-15661 Capsella grandiflora
Cagra.5804s0002 10.0kb downstream 10.0kb downstream 9599 true Scaffold5804: 1-9599 Capsella grandiflora
Cagra.5804s0002 10.0kb downstream 10.0kb downstream 6533 false Scaffold5804: 1-6533 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334037 5261 Brassicaceae Singleton cluster - no MSA
123838353 5264 Brassicales-Malvales View MSA
124346473 5266 SBM View MSA
124238803 5268 Malvidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain