Gene : Cagra.5864s0004 C. grandiflora v1.1
Defline:  (1 of 5) 1.10.3.2//1.10.3.3 - Laccase / Urishiol oxidase // L-ascorbate oxidase / Ascorbase Genomic Order:  4
Name:  ? Cagra.5864s0004 Secondary Identifier:  ? PAC:28912366
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5864s0004 0.5kb upstream 0.5kb upstream 9661 true Scaffold5864: 7340-17000 Capsella grandiflora
Cagra.5864s0004 0.5kb upstream 0.5kb upstream 399 false Scaffold5864: 16602-17000 Capsella grandiflora
Cagra.5864s0004 0.5kb downstream 0.5kb downstream 9762 true Scaffold5864: 6840-16601 Capsella grandiflora
Cagra.5864s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold5864: 6840-7339 Capsella grandiflora
Cagra.5864s0004 1.0kb upstream 1.0kb upstream 9661 true Scaffold5864: 7340-17000 Capsella grandiflora
Cagra.5864s0004 1.0kb upstream 1.0kb upstream 399 false Scaffold5864: 16602-17000 Capsella grandiflora
Cagra.5864s0004 1.0kb downstream 1.0kb downstream 10262 true Scaffold5864: 6340-16601 Capsella grandiflora
Cagra.5864s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold5864: 6340-7339 Capsella grandiflora
Cagra.5864s0004 2.0kb upstream 2.0kb upstream 9661 true Scaffold5864: 7340-17000 Capsella grandiflora
Cagra.5864s0004 2.0kb upstream 2.0kb upstream 399 false Scaffold5864: 16602-17000 Capsella grandiflora
Cagra.5864s0004 2.0kb downstream 2.0kb downstream 11262 true Scaffold5864: 5340-16601 Capsella grandiflora
Cagra.5864s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold5864: 5340-7339 Capsella grandiflora
Cagra.5864s0004 5.0kb upstream 5.0kb upstream 9661 true Scaffold5864: 7340-17000 Capsella grandiflora
Cagra.5864s0004 5.0kb upstream 5.0kb upstream 399 false Scaffold5864: 16602-17000 Capsella grandiflora
Cagra.5864s0004 5.0kb downstream 5.0kb downstream 14262 true Scaffold5864: 2340-16601 Capsella grandiflora
Cagra.5864s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold5864: 2340-7339 Capsella grandiflora
Cagra.5864s0004 10.0kb upstream 10.0kb upstream 9661 true Scaffold5864: 7340-17000 Capsella grandiflora
Cagra.5864s0004 10.0kb upstream 10.0kb upstream 399 false Scaffold5864: 16602-17000 Capsella grandiflora
Cagra.5864s0004 10.0kb downstream 10.0kb downstream 16601 true Scaffold5864: 1-16601 Capsella grandiflora
Cagra.5864s0004 10.0kb downstream 10.0kb downstream 7339 false Scaffold5864: 1-7339 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334043 5261 Brassicaceae Singleton cluster - no MSA
123838460 5264 Brassicales-Malvales View MSA
124322459 5266 SBM View MSA
124249963 5268 Malvidae View MSA
124074163 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain