Gene : Cagra.5996s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12300:SF47 - HVA22-LIKE PROTEIN K Genomic Order:  2
Name:  ? Cagra.5996s0002 Secondary Identifier:  ? PAC:28905493
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5996s0002 0.5kb upstream 0.5kb upstream 2641 true Scaffold5996: 1708-4348 Capsella grandiflora
Cagra.5996s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold5996: 1708-2207 Capsella grandiflora
Cagra.5996s0002 0.5kb downstream 0.5kb downstream 2641 true Scaffold5996: 2208-4848 Capsella grandiflora
Cagra.5996s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold5996: 4349-4848 Capsella grandiflora
Cagra.5996s0002 1.0kb upstream 1.0kb upstream 3141 true Scaffold5996: 1208-4348 Capsella grandiflora
Cagra.5996s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold5996: 1208-2207 Capsella grandiflora
Cagra.5996s0002 1.0kb downstream 1.0kb downstream 3141 true Scaffold5996: 2208-5348 Capsella grandiflora
Cagra.5996s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold5996: 4349-5348 Capsella grandiflora
Cagra.5996s0002 2.0kb upstream 2.0kb upstream 4141 true Scaffold5996: 208-4348 Capsella grandiflora
Cagra.5996s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold5996: 208-2207 Capsella grandiflora
Cagra.5996s0002 2.0kb downstream 2.0kb downstream 4141 true Scaffold5996: 2208-6348 Capsella grandiflora
Cagra.5996s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold5996: 4349-6348 Capsella grandiflora
Cagra.5996s0002 5.0kb upstream 5.0kb upstream 4348 true Scaffold5996: 1-4348 Capsella grandiflora
Cagra.5996s0002 5.0kb upstream 5.0kb upstream 2207 false Scaffold5996: 1-2207 Capsella grandiflora
Cagra.5996s0002 5.0kb downstream 5.0kb downstream 7141 true Scaffold5996: 2208-9348 Capsella grandiflora
Cagra.5996s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold5996: 4349-9348 Capsella grandiflora
Cagra.5996s0002 10.0kb upstream 10.0kb upstream 4348 true Scaffold5996: 1-4348 Capsella grandiflora
Cagra.5996s0002 10.0kb upstream 10.0kb upstream 2207 false Scaffold5996: 1-2207 Capsella grandiflora
Cagra.5996s0002 10.0kb downstream 10.0kb downstream 12141 true Scaffold5996: 2208-14348 Capsella grandiflora
Cagra.5996s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold5996: 4349-14348 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378944 5261 Brassicaceae View MSA
123837051 5264 Brassicales-Malvales View MSA
124341936 5266 SBM View MSA
124253444 5268 Malvidae View MSA
124070048 5270 Rosid View MSA
123739293 5271 Pentapetalae View MSA
122793749 5272 Eudicot View MSA
122049785 5273 Angiosperm View MSA
121348295 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain