Gene : Cagra.5742s0010 C. grandiflora v1.1
Defline:  (1 of 84) PF02362 - B3 DNA binding domain (B3) Genomic Order:  10
Name:  ? Cagra.5742s0010 Secondary Identifier:  ? PAC:28905222
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5742s0010 0.5kb upstream 0.5kb upstream 2335 true Scaffold5742: 38733-41067 Capsella grandiflora
Cagra.5742s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold5742: 40568-41067 Capsella grandiflora
Cagra.5742s0010 0.5kb downstream 0.5kb downstream 2335 true Scaffold5742: 38233-40567 Capsella grandiflora
Cagra.5742s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold5742: 38233-38732 Capsella grandiflora
Cagra.5742s0010 1.0kb upstream 1.0kb upstream 2835 true Scaffold5742: 38733-41567 Capsella grandiflora
Cagra.5742s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold5742: 40568-41567 Capsella grandiflora
Cagra.5742s0010 1.0kb downstream 1.0kb downstream 2835 true Scaffold5742: 37733-40567 Capsella grandiflora
Cagra.5742s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold5742: 37733-38732 Capsella grandiflora
Cagra.5742s0010 2.0kb upstream 2.0kb upstream 3835 true Scaffold5742: 38733-42567 Capsella grandiflora
Cagra.5742s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold5742: 40568-42567 Capsella grandiflora
Cagra.5742s0010 2.0kb downstream 2.0kb downstream 3835 true Scaffold5742: 36733-40567 Capsella grandiflora
Cagra.5742s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold5742: 36733-38732 Capsella grandiflora
Cagra.5742s0010 5.0kb upstream 5.0kb upstream 6835 true Scaffold5742: 38733-45567 Capsella grandiflora
Cagra.5742s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold5742: 40568-45567 Capsella grandiflora
Cagra.5742s0010 5.0kb downstream 5.0kb downstream 6835 true Scaffold5742: 33733-40567 Capsella grandiflora
Cagra.5742s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold5742: 33733-38732 Capsella grandiflora
Cagra.5742s0010 10.0kb upstream 10.0kb upstream 11835 true Scaffold5742: 38733-50567 Capsella grandiflora
Cagra.5742s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold5742: 40568-50567 Capsella grandiflora
Cagra.5742s0010 10.0kb downstream 10.0kb downstream 11835 true Scaffold5742: 28733-40567 Capsella grandiflora
Cagra.5742s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold5742: 28733-38732 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362721 5261 Brassicaceae View MSA
123829095 5264 Brassicales-Malvales View MSA
124340754 5266 SBM View MSA
124242242 5268 Malvidae View MSA
124072254 5270 Rosid View MSA
123750455 5271 Pentapetalae View MSA
122797801 5272 Eudicot View MSA
122048921 5273 Angiosperm View MSA
121350826 5274 Embryophyte View MSA
123427153 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain