Gene : Cagra.5497s0009 C. grandiflora v1.1

Defline:  (1 of 132) PF00847 - AP2 domain (AP2) Genomic Order:  9
Name:  ? Cagra.5497s0009 Secondary Identifier:  ? PAC:28895534

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5497s0009 0.5kb upstream 0.5kb upstream 1655 true Scaffold5497: 25075-26729 Capsella grandiflora
Cagra.5497s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold5497: 25075-25574 Capsella grandiflora
Cagra.5497s0009 0.5kb downstream 0.5kb downstream 1655 true Scaffold5497: 25575-27229 Capsella grandiflora
Cagra.5497s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold5497: 26730-27229 Capsella grandiflora
Cagra.5497s0009 1.0kb upstream 1.0kb upstream 2155 true Scaffold5497: 24575-26729 Capsella grandiflora
Cagra.5497s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold5497: 24575-25574 Capsella grandiflora
Cagra.5497s0009 1.0kb downstream 1.0kb downstream 2155 true Scaffold5497: 25575-27729 Capsella grandiflora
Cagra.5497s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold5497: 26730-27729 Capsella grandiflora
Cagra.5497s0009 2.0kb upstream 2.0kb upstream 3155 true Scaffold5497: 23575-26729 Capsella grandiflora
Cagra.5497s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold5497: 23575-25574 Capsella grandiflora
Cagra.5497s0009 2.0kb downstream 2.0kb downstream 3155 true Scaffold5497: 25575-28729 Capsella grandiflora
Cagra.5497s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold5497: 26730-28729 Capsella grandiflora
Cagra.5497s0009 5.0kb upstream 5.0kb upstream 6155 true Scaffold5497: 20575-26729 Capsella grandiflora
Cagra.5497s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold5497: 20575-25574 Capsella grandiflora
Cagra.5497s0009 5.0kb downstream 5.0kb downstream 6155 true Scaffold5497: 25575-31729 Capsella grandiflora
Cagra.5497s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold5497: 26730-31729 Capsella grandiflora
Cagra.5497s0009 10.0kb upstream 10.0kb upstream 11155 true Scaffold5497: 15575-26729 Capsella grandiflora
Cagra.5497s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold5497: 15575-25574 Capsella grandiflora
Cagra.5497s0009 10.0kb downstream 10.0kb downstream 11155 true Scaffold5497: 25575-36729 Capsella grandiflora
Cagra.5497s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold5497: 26730-36729 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377729 5261 Brassicaceae View MSA
123839333 5264 Brassicales-Malvales View MSA
124338239 5266 SBM View MSA
124245047 5268 Malvidae View MSA
124065952 5270 Rosid View MSA
123736884 5271 Pentapetalae View MSA
122769881 5272 Eudicot View MSA
122050930 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain