Gene : Cagra.5497s0008 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22904:SF169 - RNA POLYMERASE II-ASSOCIATED PROTEIN 3 Genomic Order:  8
Name:  ? Cagra.5497s0008 Secondary Identifier:  ? PAC:28895543
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5497s0008 0.5kb upstream 0.5kb upstream 2894 true Scaffold5497: 21543-24436 Capsella grandiflora
Cagra.5497s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold5497: 21543-22042 Capsella grandiflora
Cagra.5497s0008 0.5kb downstream 0.5kb downstream 2894 true Scaffold5497: 22043-24936 Capsella grandiflora
Cagra.5497s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold5497: 24437-24936 Capsella grandiflora
Cagra.5497s0008 1.0kb upstream 1.0kb upstream 3394 true Scaffold5497: 21043-24436 Capsella grandiflora
Cagra.5497s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold5497: 21043-22042 Capsella grandiflora
Cagra.5497s0008 1.0kb downstream 1.0kb downstream 3394 true Scaffold5497: 22043-25436 Capsella grandiflora
Cagra.5497s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold5497: 24437-25436 Capsella grandiflora
Cagra.5497s0008 2.0kb upstream 2.0kb upstream 4394 true Scaffold5497: 20043-24436 Capsella grandiflora
Cagra.5497s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold5497: 20043-22042 Capsella grandiflora
Cagra.5497s0008 2.0kb downstream 2.0kb downstream 4394 true Scaffold5497: 22043-26436 Capsella grandiflora
Cagra.5497s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold5497: 24437-26436 Capsella grandiflora
Cagra.5497s0008 5.0kb upstream 5.0kb upstream 7394 true Scaffold5497: 17043-24436 Capsella grandiflora
Cagra.5497s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold5497: 17043-22042 Capsella grandiflora
Cagra.5497s0008 5.0kb downstream 5.0kb downstream 7394 true Scaffold5497: 22043-29436 Capsella grandiflora
Cagra.5497s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold5497: 24437-29436 Capsella grandiflora
Cagra.5497s0008 10.0kb upstream 10.0kb upstream 12394 true Scaffold5497: 12043-24436 Capsella grandiflora
Cagra.5497s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold5497: 12043-22042 Capsella grandiflora
Cagra.5497s0008 10.0kb downstream 10.0kb downstream 12394 true Scaffold5497: 22043-34436 Capsella grandiflora
Cagra.5497s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold5497: 24437-34436 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026696 5273 Angiosperm View MSA
122378517 5261 Brassicaceae View MSA
123836853 5264 Brassicales-Malvales View MSA
124346842 5266 SBM View MSA
124246437 5268 Malvidae View MSA
124069433 5270 Rosid View MSA
123746924 5271 Pentapetalae View MSA
122794448 5272 Eudicot View MSA
123429169 5275 Viridiplantae View MSA
121348213 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain