Gene : Cagra.5588s0012 C. grandiflora v1.1
Defline:  (1 of 1) 2.1.1.166 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase / Um2552 methyltransferase Genomic Order:  12
Name:  ? Cagra.5588s0012 Secondary Identifier:  ? PAC:28914602
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5588s0012 0.5kb upstream 0.5kb upstream 2077 true Scaffold5588: 42258-44334 Capsella grandiflora
Cagra.5588s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold5588: 42258-42757 Capsella grandiflora
Cagra.5588s0012 0.5kb downstream 0.5kb downstream 2077 true Scaffold5588: 42758-44834 Capsella grandiflora
Cagra.5588s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold5588: 44335-44834 Capsella grandiflora
Cagra.5588s0012 1.0kb upstream 1.0kb upstream 2577 true Scaffold5588: 41758-44334 Capsella grandiflora
Cagra.5588s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold5588: 41758-42757 Capsella grandiflora
Cagra.5588s0012 1.0kb downstream 1.0kb downstream 2577 true Scaffold5588: 42758-45334 Capsella grandiflora
Cagra.5588s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold5588: 44335-45334 Capsella grandiflora
Cagra.5588s0012 2.0kb upstream 2.0kb upstream 3577 true Scaffold5588: 40758-44334 Capsella grandiflora
Cagra.5588s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold5588: 40758-42757 Capsella grandiflora
Cagra.5588s0012 2.0kb downstream 2.0kb downstream 3577 true Scaffold5588: 42758-46334 Capsella grandiflora
Cagra.5588s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold5588: 44335-46334 Capsella grandiflora
Cagra.5588s0012 5.0kb upstream 5.0kb upstream 6577 true Scaffold5588: 37758-44334 Capsella grandiflora
Cagra.5588s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold5588: 37758-42757 Capsella grandiflora
Cagra.5588s0012 5.0kb downstream 5.0kb downstream 6577 true Scaffold5588: 42758-49334 Capsella grandiflora
Cagra.5588s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold5588: 44335-49334 Capsella grandiflora
Cagra.5588s0012 10.0kb upstream 10.0kb upstream 11577 true Scaffold5588: 32758-44334 Capsella grandiflora
Cagra.5588s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold5588: 32758-42757 Capsella grandiflora
Cagra.5588s0012 10.0kb downstream 10.0kb downstream 11577 true Scaffold5588: 42758-54334 Capsella grandiflora
Cagra.5588s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold5588: 44335-54334 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362672 5261 Brassicaceae View MSA
123834267 5264 Brassicales-Malvales View MSA
124344708 5266 SBM View MSA
124238776 5268 Malvidae View MSA
124063503 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain