Gene : Cagra.5588s0022 C. grandiflora v1.1
Defline:  (1 of 1) 2.3.1.74 - Naringenin-chalcone synthase / Flavonone synthase Genomic Order:  22
Name:  ? Cagra.5588s0022 Secondary Identifier:  ? PAC:28914598
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY1F-FLAVSYN Capsella grandiflora pathologic  
Cgrandiflora PWY-6787 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5588s0022 0.5kb upstream 0.5kb upstream 1967 true Scaffold5588: 64319-66285 Capsella grandiflora
Cagra.5588s0022 0.5kb upstream 0.5kb upstream 500 false Scaffold5588: 64319-64818 Capsella grandiflora
Cagra.5588s0022 0.5kb downstream 0.5kb downstream 1967 true Scaffold5588: 64819-66785 Capsella grandiflora
Cagra.5588s0022 0.5kb downstream 0.5kb downstream 500 false Scaffold5588: 66286-66785 Capsella grandiflora
Cagra.5588s0022 1.0kb upstream 1.0kb upstream 2467 true Scaffold5588: 63819-66285 Capsella grandiflora
Cagra.5588s0022 1.0kb upstream 1.0kb upstream 1000 false Scaffold5588: 63819-64818 Capsella grandiflora
Cagra.5588s0022 1.0kb downstream 1.0kb downstream 2467 true Scaffold5588: 64819-67285 Capsella grandiflora
Cagra.5588s0022 1.0kb downstream 1.0kb downstream 1000 false Scaffold5588: 66286-67285 Capsella grandiflora
Cagra.5588s0022 2.0kb upstream 2.0kb upstream 3467 true Scaffold5588: 62819-66285 Capsella grandiflora
Cagra.5588s0022 2.0kb upstream 2.0kb upstream 2000 false Scaffold5588: 62819-64818 Capsella grandiflora
Cagra.5588s0022 2.0kb downstream 2.0kb downstream 3467 true Scaffold5588: 64819-68285 Capsella grandiflora
Cagra.5588s0022 2.0kb downstream 2.0kb downstream 2000 false Scaffold5588: 66286-68285 Capsella grandiflora
Cagra.5588s0022 5.0kb upstream 5.0kb upstream 6467 true Scaffold5588: 59819-66285 Capsella grandiflora
Cagra.5588s0022 5.0kb upstream 5.0kb upstream 5000 false Scaffold5588: 59819-64818 Capsella grandiflora
Cagra.5588s0022 5.0kb downstream 5.0kb downstream 4356 true Scaffold5588: 64819-69174 Capsella grandiflora
Cagra.5588s0022 5.0kb downstream 5.0kb downstream 2889 false Scaffold5588: 66286-69174 Capsella grandiflora
Cagra.5588s0022 10.0kb upstream 10.0kb upstream 11467 true Scaffold5588: 54819-66285 Capsella grandiflora
Cagra.5588s0022 10.0kb upstream 10.0kb upstream 10000 false Scaffold5588: 54819-64818 Capsella grandiflora
Cagra.5588s0022 10.0kb downstream 10.0kb downstream 4356 true Scaffold5588: 64819-69174 Capsella grandiflora
Cagra.5588s0022 10.0kb downstream 10.0kb downstream 2889 false Scaffold5588: 66286-69174 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377529 5261 Brassicaceae View MSA
123840388 5264 Brassicales-Malvales View MSA
124351590 5266 SBM View MSA
124254080 5268 Malvidae View MSA
124069836 5270 Rosid View MSA
123744406 5271 Pentapetalae View MSA
122790395 5272 Eudicot View MSA
122051180 5273 Angiosperm View MSA
121350627 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain