Gene : Cagra.5414s0008 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11709//PTHR11709:SF28 - MULTI-COPPER OXIDASE Genomic Order:  8
Name:  ? Cagra.5414s0008 Secondary Identifier:  ? PAC:28913673
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5414s0008 0.5kb upstream 0.5kb upstream 2813 true Scaffold5414: 24638-27450 Capsella grandiflora
Cagra.5414s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold5414: 24638-25137 Capsella grandiflora
Cagra.5414s0008 0.5kb downstream 0.5kb downstream 2813 true Scaffold5414: 25138-27950 Capsella grandiflora
Cagra.5414s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold5414: 27451-27950 Capsella grandiflora
Cagra.5414s0008 1.0kb upstream 1.0kb upstream 3313 true Scaffold5414: 24138-27450 Capsella grandiflora
Cagra.5414s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold5414: 24138-25137 Capsella grandiflora
Cagra.5414s0008 1.0kb downstream 1.0kb downstream 3313 true Scaffold5414: 25138-28450 Capsella grandiflora
Cagra.5414s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold5414: 27451-28450 Capsella grandiflora
Cagra.5414s0008 2.0kb upstream 2.0kb upstream 4313 true Scaffold5414: 23138-27450 Capsella grandiflora
Cagra.5414s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold5414: 23138-25137 Capsella grandiflora
Cagra.5414s0008 2.0kb downstream 2.0kb downstream 4313 true Scaffold5414: 25138-29450 Capsella grandiflora
Cagra.5414s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold5414: 27451-29450 Capsella grandiflora
Cagra.5414s0008 5.0kb upstream 5.0kb upstream 7313 true Scaffold5414: 20138-27450 Capsella grandiflora
Cagra.5414s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold5414: 20138-25137 Capsella grandiflora
Cagra.5414s0008 5.0kb downstream 5.0kb downstream 7313 true Scaffold5414: 25138-32450 Capsella grandiflora
Cagra.5414s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold5414: 27451-32450 Capsella grandiflora
Cagra.5414s0008 10.0kb upstream 10.0kb upstream 12313 true Scaffold5414: 15138-27450 Capsella grandiflora
Cagra.5414s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold5414: 15138-25137 Capsella grandiflora
Cagra.5414s0008 10.0kb downstream 10.0kb downstream 12313 true Scaffold5414: 25138-37450 Capsella grandiflora
Cagra.5414s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold5414: 27451-37450 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373963 5261 Brassicaceae View MSA
123836254 5264 Brassicales-Malvales View MSA
124342178 5266 SBM View MSA
124254383 5268 Malvidae View MSA
124065870 5270 Rosid View MSA
123745907 5271 Pentapetalae View MSA
122793198 5272 Eudicot View MSA
122046121 5273 Angiosperm View MSA
121348734 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain