Gene : Cagra.5428s0004 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11760:SF20 - 40S RIBOSOMAL PROTEIN S3-1-RELATED Genomic Order:  4
Name:  ? Cagra.5428s0004 Secondary Identifier:  ? PAC:28906053
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5428s0004 0.5kb upstream 0.5kb upstream 2414 true Scaffold5428: 11324-13737 Capsella grandiflora
Cagra.5428s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold5428: 13238-13737 Capsella grandiflora
Cagra.5428s0004 0.5kb downstream 0.5kb downstream 2414 true Scaffold5428: 10824-13237 Capsella grandiflora
Cagra.5428s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold5428: 10824-11323 Capsella grandiflora
Cagra.5428s0004 1.0kb upstream 1.0kb upstream 2914 true Scaffold5428: 11324-14237 Capsella grandiflora
Cagra.5428s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold5428: 13238-14237 Capsella grandiflora
Cagra.5428s0004 1.0kb downstream 1.0kb downstream 2914 true Scaffold5428: 10324-13237 Capsella grandiflora
Cagra.5428s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold5428: 10324-11323 Capsella grandiflora
Cagra.5428s0004 2.0kb upstream 2.0kb upstream 3914 true Scaffold5428: 11324-15237 Capsella grandiflora
Cagra.5428s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold5428: 13238-15237 Capsella grandiflora
Cagra.5428s0004 2.0kb downstream 2.0kb downstream 3914 true Scaffold5428: 9324-13237 Capsella grandiflora
Cagra.5428s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold5428: 9324-11323 Capsella grandiflora
Cagra.5428s0004 5.0kb upstream 5.0kb upstream 5720 true Scaffold5428: 11324-17043 Capsella grandiflora
Cagra.5428s0004 5.0kb upstream 5.0kb upstream 3806 false Scaffold5428: 13238-17043 Capsella grandiflora
Cagra.5428s0004 5.0kb downstream 5.0kb downstream 6914 true Scaffold5428: 6324-13237 Capsella grandiflora
Cagra.5428s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold5428: 6324-11323 Capsella grandiflora
Cagra.5428s0004 10.0kb upstream 10.0kb upstream 5720 true Scaffold5428: 11324-17043 Capsella grandiflora
Cagra.5428s0004 10.0kb upstream 10.0kb upstream 3806 false Scaffold5428: 13238-17043 Capsella grandiflora
Cagra.5428s0004 10.0kb downstream 10.0kb downstream 11914 true Scaffold5428: 1324-13237 Capsella grandiflora
Cagra.5428s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold5428: 1324-11323 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343444 5261 Brassicaceae View MSA
123840317 5264 Brassicales-Malvales View MSA
124349099 5266 SBM View MSA
124252771 5268 Malvidae View MSA
124071878 5270 Rosid View MSA
123743530 5271 Pentapetalae View MSA
122790634 5272 Eudicot View MSA
122043820 5273 Angiosperm View MSA
121347963 5274 Embryophyte View MSA
123426422 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain