Gene : Cagra.7242s0004 C. grandiflora v1.1
Defline:  (1 of 1) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  4
Name:  ? Cagra.7242s0004 Secondary Identifier:  ? PAC:28906857
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5910 Capsella grandiflora pathologic  
Cgrandiflora PWY-922 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7242s0004 0.5kb upstream 0.5kb upstream 3639 true Scaffold7242: 20476-24114 Capsella grandiflora
Cagra.7242s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold7242: 20476-20975 Capsella grandiflora
Cagra.7242s0004 0.5kb downstream 0.5kb downstream 3639 true Scaffold7242: 20976-24614 Capsella grandiflora
Cagra.7242s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold7242: 24115-24614 Capsella grandiflora
Cagra.7242s0004 1.0kb upstream 1.0kb upstream 4139 true Scaffold7242: 19976-24114 Capsella grandiflora
Cagra.7242s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold7242: 19976-20975 Capsella grandiflora
Cagra.7242s0004 1.0kb downstream 1.0kb downstream 4139 true Scaffold7242: 20976-25114 Capsella grandiflora
Cagra.7242s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold7242: 24115-25114 Capsella grandiflora
Cagra.7242s0004 2.0kb upstream 2.0kb upstream 5139 true Scaffold7242: 18976-24114 Capsella grandiflora
Cagra.7242s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold7242: 18976-20975 Capsella grandiflora
Cagra.7242s0004 2.0kb downstream 2.0kb downstream 5139 true Scaffold7242: 20976-26114 Capsella grandiflora
Cagra.7242s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold7242: 24115-26114 Capsella grandiflora
Cagra.7242s0004 5.0kb upstream 5.0kb upstream 8139 true Scaffold7242: 15976-24114 Capsella grandiflora
Cagra.7242s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold7242: 15976-20975 Capsella grandiflora
Cagra.7242s0004 5.0kb downstream 5.0kb downstream 8139 true Scaffold7242: 20976-29114 Capsella grandiflora
Cagra.7242s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold7242: 24115-29114 Capsella grandiflora
Cagra.7242s0004 10.0kb upstream 10.0kb upstream 13139 true Scaffold7242: 10976-24114 Capsella grandiflora
Cagra.7242s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold7242: 10976-20975 Capsella grandiflora
Cagra.7242s0004 10.0kb downstream 10.0kb downstream 13139 true Scaffold7242: 20976-34114 Capsella grandiflora
Cagra.7242s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold7242: 24115-34114 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368774 5261 Brassicaceae View MSA
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain