Gene : Cagra.6942s0001 C. grandiflora v1.1
Defline:  (1 of 4) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  1
Name:  ? Cagra.6942s0001 Secondary Identifier:  ? PAC:28901249
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6942s0001 0.5kb upstream 0.5kb upstream 4309 true Scaffold6942: 1-4309 Capsella grandiflora
Cagra.6942s0001 0.5kb upstream 0.5kb upstream 351 false Scaffold6942: 1-351 Capsella grandiflora
Cagra.6942s0001 0.5kb downstream 0.5kb downstream 4458 true Scaffold6942: 352-4809 Capsella grandiflora
Cagra.6942s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold6942: 4310-4809 Capsella grandiflora
Cagra.6942s0001 1.0kb upstream 1.0kb upstream 4309 true Scaffold6942: 1-4309 Capsella grandiflora
Cagra.6942s0001 1.0kb upstream 1.0kb upstream 351 false Scaffold6942: 1-351 Capsella grandiflora
Cagra.6942s0001 1.0kb downstream 1.0kb downstream 4958 true Scaffold6942: 352-5309 Capsella grandiflora
Cagra.6942s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold6942: 4310-5309 Capsella grandiflora
Cagra.6942s0001 2.0kb upstream 2.0kb upstream 4309 true Scaffold6942: 1-4309 Capsella grandiflora
Cagra.6942s0001 2.0kb upstream 2.0kb upstream 351 false Scaffold6942: 1-351 Capsella grandiflora
Cagra.6942s0001 2.0kb downstream 2.0kb downstream 5958 true Scaffold6942: 352-6309 Capsella grandiflora
Cagra.6942s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold6942: 4310-6309 Capsella grandiflora
Cagra.6942s0001 5.0kb upstream 5.0kb upstream 4309 true Scaffold6942: 1-4309 Capsella grandiflora
Cagra.6942s0001 5.0kb upstream 5.0kb upstream 351 false Scaffold6942: 1-351 Capsella grandiflora
Cagra.6942s0001 5.0kb downstream 5.0kb downstream 8958 true Scaffold6942: 352-9309 Capsella grandiflora
Cagra.6942s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold6942: 4310-9309 Capsella grandiflora
Cagra.6942s0001 10.0kb upstream 10.0kb upstream 4309 true Scaffold6942: 1-4309 Capsella grandiflora
Cagra.6942s0001 10.0kb upstream 10.0kb upstream 351 false Scaffold6942: 1-351 Capsella grandiflora
Cagra.6942s0001 10.0kb downstream 10.0kb downstream 13958 true Scaffold6942: 352-14309 Capsella grandiflora
Cagra.6942s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold6942: 4310-14309 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365467 5261 Brassicaceae View MSA
123839797 5264 Brassicales-Malvales View MSA
124343123 5266 SBM View MSA
124245225 5268 Malvidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain