Gene : Cagra.6788s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11581 - 30S/40S RIBOSOMAL PROTEIN S4 Genomic Order:  6
Name:  ? Cagra.6788s0006 Secondary Identifier:  ? PAC:28905446
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6788s0006 0.5kb upstream 0.5kb upstream 2435 true Scaffold6788: 28968-31402 Capsella grandiflora
Cagra.6788s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold6788: 30903-31402 Capsella grandiflora
Cagra.6788s0006 0.5kb downstream 0.5kb downstream 2435 true Scaffold6788: 28468-30902 Capsella grandiflora
Cagra.6788s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold6788: 28468-28967 Capsella grandiflora
Cagra.6788s0006 1.0kb upstream 1.0kb upstream 2935 true Scaffold6788: 28968-31902 Capsella grandiflora
Cagra.6788s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold6788: 30903-31902 Capsella grandiflora
Cagra.6788s0006 1.0kb downstream 1.0kb downstream 2935 true Scaffold6788: 27968-30902 Capsella grandiflora
Cagra.6788s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold6788: 27968-28967 Capsella grandiflora
Cagra.6788s0006 2.0kb upstream 2.0kb upstream 3935 true Scaffold6788: 28968-32902 Capsella grandiflora
Cagra.6788s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold6788: 30903-32902 Capsella grandiflora
Cagra.6788s0006 2.0kb downstream 2.0kb downstream 3935 true Scaffold6788: 26968-30902 Capsella grandiflora
Cagra.6788s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold6788: 26968-28967 Capsella grandiflora
Cagra.6788s0006 5.0kb upstream 5.0kb upstream 6935 true Scaffold6788: 28968-35902 Capsella grandiflora
Cagra.6788s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold6788: 30903-35902 Capsella grandiflora
Cagra.6788s0006 5.0kb downstream 5.0kb downstream 6935 true Scaffold6788: 23968-30902 Capsella grandiflora
Cagra.6788s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold6788: 23968-28967 Capsella grandiflora
Cagra.6788s0006 10.0kb upstream 10.0kb upstream 10771 true Scaffold6788: 28968-39738 Capsella grandiflora
Cagra.6788s0006 10.0kb upstream 10.0kb upstream 8836 false Scaffold6788: 30903-39738 Capsella grandiflora
Cagra.6788s0006 10.0kb downstream 10.0kb downstream 11935 true Scaffold6788: 18968-30902 Capsella grandiflora
Cagra.6788s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold6788: 18968-28967 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380883 5261 Brassicaceae View MSA
123838802 5264 Brassicales-Malvales View MSA
124336742 5266 SBM View MSA
124243857 5268 Malvidae View MSA
124070579 5270 Rosid View MSA
123750810 5271 Pentapetalae View MSA
122793916 5272 Eudicot View MSA
122046993 5273 Angiosperm View MSA
121344969 5274 Embryophyte View MSA
123426872 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain