Gene : Cagra.6677s0006 C. grandiflora v1.1
Defline:  (1 of 3) PTHR15245:SF11 - PHOSPHATIDYLINOSITOL 3-KINASE-RELATED PROTEIN KINASE Genomic Order:  6
Name:  ? Cagra.6677s0006 Secondary Identifier:  ? PAC:28896520
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6351 Capsella grandiflora pathologic  
Cgrandiflora PWY-6352 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6677s0006 0.5kb upstream 0.5kb upstream 3497 true Scaffold6677: 14136-17632 Capsella grandiflora
Cagra.6677s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold6677: 17133-17632 Capsella grandiflora
Cagra.6677s0006 0.5kb downstream 0.5kb downstream 3497 true Scaffold6677: 13636-17132 Capsella grandiflora
Cagra.6677s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold6677: 13636-14135 Capsella grandiflora
Cagra.6677s0006 1.0kb upstream 1.0kb upstream 3997 true Scaffold6677: 14136-18132 Capsella grandiflora
Cagra.6677s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold6677: 17133-18132 Capsella grandiflora
Cagra.6677s0006 1.0kb downstream 1.0kb downstream 3997 true Scaffold6677: 13136-17132 Capsella grandiflora
Cagra.6677s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold6677: 13136-14135 Capsella grandiflora
Cagra.6677s0006 2.0kb upstream 2.0kb upstream 4997 true Scaffold6677: 14136-19132 Capsella grandiflora
Cagra.6677s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold6677: 17133-19132 Capsella grandiflora
Cagra.6677s0006 2.0kb downstream 2.0kb downstream 4997 true Scaffold6677: 12136-17132 Capsella grandiflora
Cagra.6677s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold6677: 12136-14135 Capsella grandiflora
Cagra.6677s0006 5.0kb upstream 5.0kb upstream 7997 true Scaffold6677: 14136-22132 Capsella grandiflora
Cagra.6677s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold6677: 17133-22132 Capsella grandiflora
Cagra.6677s0006 5.0kb downstream 5.0kb downstream 7997 true Scaffold6677: 9136-17132 Capsella grandiflora
Cagra.6677s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold6677: 9136-14135 Capsella grandiflora
Cagra.6677s0006 10.0kb upstream 10.0kb upstream 12997 true Scaffold6677: 14136-27132 Capsella grandiflora
Cagra.6677s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold6677: 17133-27132 Capsella grandiflora
Cagra.6677s0006 10.0kb downstream 10.0kb downstream 12997 true Scaffold6677: 4136-17132 Capsella grandiflora
Cagra.6677s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold6677: 4136-14135 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364725 5261 Brassicaceae View MSA
123837986 5264 Brassicales-Malvales View MSA
124342146 5266 SBM View MSA
124253244 5268 Malvidae View MSA
124068330 5270 Rosid View MSA
123741800 5271 Pentapetalae View MSA
122793394 5272 Eudicot View MSA
122050959 5273 Angiosperm View MSA
121351687 5274 Embryophyte View MSA
123427554 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain