Gene : Cagra.8632s0005 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11404:SF6 - SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL Genomic Order:  5
Name:  ? Cagra.8632s0005 Secondary Identifier:  ? PAC:28906286
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora DETOX1-PWY Capsella grandiflora pathologic  
Cgrandiflora DETOX1-PWY-1 Capsella grandiflora pathologic  
Cgrandiflora PWY-6854 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8632s0005 0.5kb upstream 0.5kb upstream 2283 true Scaffold8632: 11117-13399 Capsella grandiflora
Cagra.8632s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold8632: 12900-13399 Capsella grandiflora
Cagra.8632s0005 0.5kb downstream 0.5kb downstream 2283 true Scaffold8632: 10617-12899 Capsella grandiflora
Cagra.8632s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold8632: 10617-11116 Capsella grandiflora
Cagra.8632s0005 1.0kb upstream 1.0kb upstream 2783 true Scaffold8632: 11117-13899 Capsella grandiflora
Cagra.8632s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold8632: 12900-13899 Capsella grandiflora
Cagra.8632s0005 1.0kb downstream 1.0kb downstream 2783 true Scaffold8632: 10117-12899 Capsella grandiflora
Cagra.8632s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold8632: 10117-11116 Capsella grandiflora
Cagra.8632s0005 2.0kb upstream 2.0kb upstream 3783 true Scaffold8632: 11117-14899 Capsella grandiflora
Cagra.8632s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold8632: 12900-14899 Capsella grandiflora
Cagra.8632s0005 2.0kb downstream 2.0kb downstream 3783 true Scaffold8632: 9117-12899 Capsella grandiflora
Cagra.8632s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold8632: 9117-11116 Capsella grandiflora
Cagra.8632s0005 5.0kb upstream 5.0kb upstream 6783 true Scaffold8632: 11117-17899 Capsella grandiflora
Cagra.8632s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold8632: 12900-17899 Capsella grandiflora
Cagra.8632s0005 5.0kb downstream 5.0kb downstream 6783 true Scaffold8632: 6117-12899 Capsella grandiflora
Cagra.8632s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold8632: 6117-11116 Capsella grandiflora
Cagra.8632s0005 10.0kb upstream 10.0kb upstream 11783 true Scaffold8632: 11117-22899 Capsella grandiflora
Cagra.8632s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold8632: 12900-22899 Capsella grandiflora
Cagra.8632s0005 10.0kb downstream 10.0kb downstream 11783 true Scaffold8632: 1117-12899 Capsella grandiflora
Cagra.8632s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold8632: 1117-11116 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377659 5261 Brassicaceae View MSA
123838385 5264 Brassicales-Malvales View MSA
124322443 5266 SBM View MSA
124240779 5268 Malvidae View MSA
124073146 5270 Rosid View MSA
123736738 5271 Pentapetalae View MSA
122792658 5272 Eudicot View MSA
122050195 5273 Angiosperm View MSA
121345064 5274 Embryophyte View MSA
123426666 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain