Gene : Cagra.8632s0016 C. grandiflora v1.1
Defline:  (1 of 2) PTHR15141:SF40 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED Genomic Order:  16
Name:  ? Cagra.8632s0016 Secondary Identifier:  ? PAC:28906284
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8632s0016 0.5kb upstream 0.5kb upstream 2937 true Scaffold8632: 47114-50050 Capsella grandiflora
Cagra.8632s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold8632: 49551-50050 Capsella grandiflora
Cagra.8632s0016 0.5kb downstream 0.5kb downstream 2937 true Scaffold8632: 46614-49550 Capsella grandiflora
Cagra.8632s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold8632: 46614-47113 Capsella grandiflora
Cagra.8632s0016 1.0kb upstream 1.0kb upstream 3437 true Scaffold8632: 47114-50550 Capsella grandiflora
Cagra.8632s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold8632: 49551-50550 Capsella grandiflora
Cagra.8632s0016 1.0kb downstream 1.0kb downstream 3437 true Scaffold8632: 46114-49550 Capsella grandiflora
Cagra.8632s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold8632: 46114-47113 Capsella grandiflora
Cagra.8632s0016 2.0kb upstream 2.0kb upstream 4437 true Scaffold8632: 47114-51550 Capsella grandiflora
Cagra.8632s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold8632: 49551-51550 Capsella grandiflora
Cagra.8632s0016 2.0kb downstream 2.0kb downstream 4437 true Scaffold8632: 45114-49550 Capsella grandiflora
Cagra.8632s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold8632: 45114-47113 Capsella grandiflora
Cagra.8632s0016 5.0kb upstream 5.0kb upstream 7437 true Scaffold8632: 47114-54550 Capsella grandiflora
Cagra.8632s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold8632: 49551-54550 Capsella grandiflora
Cagra.8632s0016 5.0kb downstream 5.0kb downstream 7437 true Scaffold8632: 42114-49550 Capsella grandiflora
Cagra.8632s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold8632: 42114-47113 Capsella grandiflora
Cagra.8632s0016 10.0kb upstream 10.0kb upstream 9919 true Scaffold8632: 47114-57032 Capsella grandiflora
Cagra.8632s0016 10.0kb upstream 10.0kb upstream 7482 false Scaffold8632: 49551-57032 Capsella grandiflora
Cagra.8632s0016 10.0kb downstream 10.0kb downstream 12437 true Scaffold8632: 37114-49550 Capsella grandiflora
Cagra.8632s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold8632: 37114-47113 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361342 5261 Brassicaceae View MSA
123798140 5264 Brassicales-Malvales View MSA
124295815 5266 SBM View MSA
124148148 5268 Malvidae View MSA
123874204 5270 Rosid View MSA
123747167 5271 Pentapetalae View MSA
122796041 5272 Eudicot View MSA
122045393 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain