Gene : Cagra.8346s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR15184:SF3 - ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL Genomic Order:  7
Name:  ? Cagra.8346s0007 Secondary Identifier:  ? PAC:28904042
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6126 Capsella grandiflora pathologic  
Cgrandiflora PWY-7219 Capsella grandiflora pathologic  
Cgrandiflora PWY-7229 Capsella grandiflora pathologic  
Cgrandiflora PWY-841 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8346s0007 0.5kb upstream 0.5kb upstream 2049 true Scaffold8346: 15596-17644 Capsella grandiflora
Cagra.8346s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold8346: 17145-17644 Capsella grandiflora
Cagra.8346s0007 0.5kb downstream 0.5kb downstream 2049 true Scaffold8346: 15096-17144 Capsella grandiflora
Cagra.8346s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold8346: 15096-15595 Capsella grandiflora
Cagra.8346s0007 1.0kb upstream 1.0kb upstream 2549 true Scaffold8346: 15596-18144 Capsella grandiflora
Cagra.8346s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold8346: 17145-18144 Capsella grandiflora
Cagra.8346s0007 1.0kb downstream 1.0kb downstream 2549 true Scaffold8346: 14596-17144 Capsella grandiflora
Cagra.8346s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold8346: 14596-15595 Capsella grandiflora
Cagra.8346s0007 2.0kb upstream 2.0kb upstream 3549 true Scaffold8346: 15596-19144 Capsella grandiflora
Cagra.8346s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold8346: 17145-19144 Capsella grandiflora
Cagra.8346s0007 2.0kb downstream 2.0kb downstream 3549 true Scaffold8346: 13596-17144 Capsella grandiflora
Cagra.8346s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold8346: 13596-15595 Capsella grandiflora
Cagra.8346s0007 5.0kb upstream 5.0kb upstream 6549 true Scaffold8346: 15596-22144 Capsella grandiflora
Cagra.8346s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold8346: 17145-22144 Capsella grandiflora
Cagra.8346s0007 5.0kb downstream 5.0kb downstream 6549 true Scaffold8346: 10596-17144 Capsella grandiflora
Cagra.8346s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold8346: 10596-15595 Capsella grandiflora
Cagra.8346s0007 10.0kb upstream 10.0kb upstream 6697 true Scaffold8346: 15596-22292 Capsella grandiflora
Cagra.8346s0007 10.0kb upstream 10.0kb upstream 5148 false Scaffold8346: 17145-22292 Capsella grandiflora
Cagra.8346s0007 10.0kb downstream 10.0kb downstream 11549 true Scaffold8346: 5596-17144 Capsella grandiflora
Cagra.8346s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold8346: 5596-15595 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334383 5261 Brassicaceae Singleton cluster - no MSA
123775226 5264 Brassicales-Malvales Singleton cluster - no MSA
124273638 5266 SBM Singleton cluster - no MSA
124253426 5268 Malvidae View MSA
124064158 5270 Rosid View MSA
123753752 5271 Pentapetalae View MSA
122797462 5272 Eudicot View MSA
122051574 5273 Angiosperm View MSA
123429126 5275 Viridiplantae View MSA
121351571 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain