Gene : Cagra.8452s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Genomic Order:  1
Name:  ? Cagra.8452s0001 Secondary Identifier:  ? PAC:28901471
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8452s0001 0.5kb upstream 0.5kb upstream 4583 true Scaffold8452: 374-4956 Capsella grandiflora
Cagra.8452s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold8452: 4457-4956 Capsella grandiflora
Cagra.8452s0001 0.5kb downstream 0.5kb downstream 4456 true Scaffold8452: 1-4456 Capsella grandiflora
Cagra.8452s0001 0.5kb downstream 0.5kb downstream 373 false Scaffold8452: 1-373 Capsella grandiflora
Cagra.8452s0001 1.0kb upstream 1.0kb upstream 5083 true Scaffold8452: 374-5456 Capsella grandiflora
Cagra.8452s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold8452: 4457-5456 Capsella grandiflora
Cagra.8452s0001 1.0kb downstream 1.0kb downstream 4456 true Scaffold8452: 1-4456 Capsella grandiflora
Cagra.8452s0001 1.0kb downstream 1.0kb downstream 373 false Scaffold8452: 1-373 Capsella grandiflora
Cagra.8452s0001 2.0kb upstream 2.0kb upstream 6083 true Scaffold8452: 374-6456 Capsella grandiflora
Cagra.8452s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold8452: 4457-6456 Capsella grandiflora
Cagra.8452s0001 2.0kb downstream 2.0kb downstream 4456 true Scaffold8452: 1-4456 Capsella grandiflora
Cagra.8452s0001 2.0kb downstream 2.0kb downstream 373 false Scaffold8452: 1-373 Capsella grandiflora
Cagra.8452s0001 5.0kb upstream 5.0kb upstream 9083 true Scaffold8452: 374-9456 Capsella grandiflora
Cagra.8452s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold8452: 4457-9456 Capsella grandiflora
Cagra.8452s0001 5.0kb downstream 5.0kb downstream 4456 true Scaffold8452: 1-4456 Capsella grandiflora
Cagra.8452s0001 5.0kb downstream 5.0kb downstream 373 false Scaffold8452: 1-373 Capsella grandiflora
Cagra.8452s0001 10.0kb upstream 10.0kb upstream 14083 true Scaffold8452: 374-14456 Capsella grandiflora
Cagra.8452s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold8452: 4457-14456 Capsella grandiflora
Cagra.8452s0001 10.0kb downstream 10.0kb downstream 4456 true Scaffold8452: 1-4456 Capsella grandiflora
Cagra.8452s0001 10.0kb downstream 10.0kb downstream 373 false Scaffold8452: 1-373 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363512 5261 Brassicaceae View MSA
123834871 5264 Brassicales-Malvales View MSA
124341938 5266 SBM View MSA
124238434 5268 Malvidae View MSA
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain