Gene : Cagra.8004s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12547:SF60 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14-RELATED Genomic Order:  2
Name:  ? Cagra.8004s0002 Secondary Identifier:  ? PAC:28919991
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8004s0002 0.5kb upstream 0.5kb upstream 1862 true Scaffold8004: 3190-5051 Capsella grandiflora
Cagra.8004s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold8004: 3190-3689 Capsella grandiflora
Cagra.8004s0002 0.5kb downstream 0.5kb downstream 1862 true Scaffold8004: 3690-5551 Capsella grandiflora
Cagra.8004s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold8004: 5052-5551 Capsella grandiflora
Cagra.8004s0002 1.0kb upstream 1.0kb upstream 2362 true Scaffold8004: 2690-5051 Capsella grandiflora
Cagra.8004s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold8004: 2690-3689 Capsella grandiflora
Cagra.8004s0002 1.0kb downstream 1.0kb downstream 2362 true Scaffold8004: 3690-6051 Capsella grandiflora
Cagra.8004s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold8004: 5052-6051 Capsella grandiflora
Cagra.8004s0002 2.0kb upstream 2.0kb upstream 3362 true Scaffold8004: 1690-5051 Capsella grandiflora
Cagra.8004s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold8004: 1690-3689 Capsella grandiflora
Cagra.8004s0002 2.0kb downstream 2.0kb downstream 3362 true Scaffold8004: 3690-7051 Capsella grandiflora
Cagra.8004s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold8004: 5052-7051 Capsella grandiflora
Cagra.8004s0002 5.0kb upstream 5.0kb upstream 5051 true Scaffold8004: 1-5051 Capsella grandiflora
Cagra.8004s0002 5.0kb upstream 5.0kb upstream 3689 false Scaffold8004: 1-3689 Capsella grandiflora
Cagra.8004s0002 5.0kb downstream 5.0kb downstream 6362 true Scaffold8004: 3690-10051 Capsella grandiflora
Cagra.8004s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold8004: 5052-10051 Capsella grandiflora
Cagra.8004s0002 10.0kb upstream 10.0kb upstream 5051 true Scaffold8004: 1-5051 Capsella grandiflora
Cagra.8004s0002 10.0kb upstream 10.0kb upstream 3689 false Scaffold8004: 1-3689 Capsella grandiflora
Cagra.8004s0002 10.0kb downstream 10.0kb downstream 10275 true Scaffold8004: 3690-13964 Capsella grandiflora
Cagra.8004s0002 10.0kb downstream 10.0kb downstream 8913 false Scaffold8004: 5052-13964 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371003 5261 Brassicaceae View MSA
123838341 5264 Brassicales-Malvales View MSA
124338797 5266 SBM View MSA
124237966 5268 Malvidae View MSA
124071931 5270 Rosid View MSA
123741558 5271 Pentapetalae View MSA
122789151 5272 Eudicot View MSA
122047448 5273 Angiosperm View MSA
121350535 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain