Gene : Cagra.7526s0017 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Genomic Order:  17
Name:  ? Cagra.7526s0017 Secondary Identifier:  ? PAC:28911228
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7560 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7526s0017 0.5kb upstream 0.5kb upstream 3929 true Scaffold7526: 70277-74205 Capsella grandiflora
Cagra.7526s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold7526: 73706-74205 Capsella grandiflora
Cagra.7526s0017 0.5kb downstream 0.5kb downstream 3929 true Scaffold7526: 69777-73705 Capsella grandiflora
Cagra.7526s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold7526: 69777-70276 Capsella grandiflora
Cagra.7526s0017 1.0kb upstream 1.0kb upstream 4429 true Scaffold7526: 70277-74705 Capsella grandiflora
Cagra.7526s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold7526: 73706-74705 Capsella grandiflora
Cagra.7526s0017 1.0kb downstream 1.0kb downstream 4429 true Scaffold7526: 69277-73705 Capsella grandiflora
Cagra.7526s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold7526: 69277-70276 Capsella grandiflora
Cagra.7526s0017 2.0kb upstream 2.0kb upstream 5429 true Scaffold7526: 70277-75705 Capsella grandiflora
Cagra.7526s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold7526: 73706-75705 Capsella grandiflora
Cagra.7526s0017 2.0kb downstream 2.0kb downstream 5429 true Scaffold7526: 68277-73705 Capsella grandiflora
Cagra.7526s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold7526: 68277-70276 Capsella grandiflora
Cagra.7526s0017 5.0kb upstream 5.0kb upstream 8429 true Scaffold7526: 70277-78705 Capsella grandiflora
Cagra.7526s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold7526: 73706-78705 Capsella grandiflora
Cagra.7526s0017 5.0kb downstream 5.0kb downstream 8429 true Scaffold7526: 65277-73705 Capsella grandiflora
Cagra.7526s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold7526: 65277-70276 Capsella grandiflora
Cagra.7526s0017 10.0kb upstream 10.0kb upstream 13429 true Scaffold7526: 70277-83705 Capsella grandiflora
Cagra.7526s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold7526: 73706-83705 Capsella grandiflora
Cagra.7526s0017 10.0kb downstream 10.0kb downstream 13429 true Scaffold7526: 60277-73705 Capsella grandiflora
Cagra.7526s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold7526: 60277-70276 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373986 5261 Brassicaceae View MSA
123829072 5264 Brassicales-Malvales View MSA
124342617 5266 SBM View MSA
124239225 5268 Malvidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain