Gene : Cagra.12696s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR33447:SF2 - PROTEIN PCS-1, ISOFORM A Genomic Order:  1
Name:  ? Cagra.12696s0001 Secondary Identifier:  ? PAC:28901289
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6745 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12696s0001 0.5kb upstream 0.5kb upstream 3391 true Scaffold12696: 332-3722 Capsella grandiflora
Cagra.12696s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold12696: 332-831 Capsella grandiflora
Cagra.12696s0001 0.5kb downstream 0.5kb downstream 3391 true Scaffold12696: 832-4222 Capsella grandiflora
Cagra.12696s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold12696: 3723-4222 Capsella grandiflora
Cagra.12696s0001 1.0kb upstream 1.0kb upstream 3722 true Scaffold12696: 1-3722 Capsella grandiflora
Cagra.12696s0001 1.0kb upstream 1.0kb upstream 831 false Scaffold12696: 1-831 Capsella grandiflora
Cagra.12696s0001 1.0kb downstream 1.0kb downstream 3891 true Scaffold12696: 832-4722 Capsella grandiflora
Cagra.12696s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold12696: 3723-4722 Capsella grandiflora
Cagra.12696s0001 2.0kb upstream 2.0kb upstream 3722 true Scaffold12696: 1-3722 Capsella grandiflora
Cagra.12696s0001 2.0kb upstream 2.0kb upstream 831 false Scaffold12696: 1-831 Capsella grandiflora
Cagra.12696s0001 2.0kb downstream 2.0kb downstream 4891 true Scaffold12696: 832-5722 Capsella grandiflora
Cagra.12696s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold12696: 3723-5722 Capsella grandiflora
Cagra.12696s0001 5.0kb upstream 5.0kb upstream 3722 true Scaffold12696: 1-3722 Capsella grandiflora
Cagra.12696s0001 5.0kb upstream 5.0kb upstream 831 false Scaffold12696: 1-831 Capsella grandiflora
Cagra.12696s0001 5.0kb downstream 5.0kb downstream 7891 true Scaffold12696: 832-8722 Capsella grandiflora
Cagra.12696s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold12696: 3723-8722 Capsella grandiflora
Cagra.12696s0001 10.0kb upstream 10.0kb upstream 3722 true Scaffold12696: 1-3722 Capsella grandiflora
Cagra.12696s0001 10.0kb upstream 10.0kb upstream 831 false Scaffold12696: 1-831 Capsella grandiflora
Cagra.12696s0001 10.0kb downstream 10.0kb downstream 12891 true Scaffold12696: 832-13722 Capsella grandiflora
Cagra.12696s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold12696: 3723-13722 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370507 5261 Brassicaceae View MSA
123834332 5264 Brassicales-Malvales View MSA
124346208 5266 SBM View MSA
124237601 5268 Malvidae View MSA
124068686 5270 Rosid View MSA
123741810 5271 Pentapetalae View MSA
122787952 5272 Eudicot View MSA
122042106 5273 Angiosperm View MSA
123429015 5275 Viridiplantae View MSA
121309923 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain