Gene : Cagra.12978s0004 C. grandiflora v1.1
Defline:  (1 of 1) 1.2.1.27 - Methylmalonate-semialdehyde dehydrogenase (CoA acylating) / MSDH Genomic Order:  4
Name:  ? Cagra.12978s0004 Secondary Identifier:  ? PAC:28893479
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora VALDEG-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12978s0004 0.5kb upstream 0.5kb upstream 4408 true Scaffold12978: 10442-14849 Capsella grandiflora
Cagra.12978s0004 0.5kb upstream 0.5kb upstream 237 false Scaffold12978: 14613-14849 Capsella grandiflora
Cagra.12978s0004 0.5kb downstream 0.5kb downstream 4671 true Scaffold12978: 9942-14612 Capsella grandiflora
Cagra.12978s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold12978: 9942-10441 Capsella grandiflora
Cagra.12978s0004 1.0kb upstream 1.0kb upstream 4408 true Scaffold12978: 10442-14849 Capsella grandiflora
Cagra.12978s0004 1.0kb upstream 1.0kb upstream 237 false Scaffold12978: 14613-14849 Capsella grandiflora
Cagra.12978s0004 1.0kb downstream 1.0kb downstream 5171 true Scaffold12978: 9442-14612 Capsella grandiflora
Cagra.12978s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold12978: 9442-10441 Capsella grandiflora
Cagra.12978s0004 2.0kb upstream 2.0kb upstream 4408 true Scaffold12978: 10442-14849 Capsella grandiflora
Cagra.12978s0004 2.0kb upstream 2.0kb upstream 237 false Scaffold12978: 14613-14849 Capsella grandiflora
Cagra.12978s0004 2.0kb downstream 2.0kb downstream 6171 true Scaffold12978: 8442-14612 Capsella grandiflora
Cagra.12978s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold12978: 8442-10441 Capsella grandiflora
Cagra.12978s0004 5.0kb upstream 5.0kb upstream 4408 true Scaffold12978: 10442-14849 Capsella grandiflora
Cagra.12978s0004 5.0kb upstream 5.0kb upstream 237 false Scaffold12978: 14613-14849 Capsella grandiflora
Cagra.12978s0004 5.0kb downstream 5.0kb downstream 9171 true Scaffold12978: 5442-14612 Capsella grandiflora
Cagra.12978s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold12978: 5442-10441 Capsella grandiflora
Cagra.12978s0004 10.0kb upstream 10.0kb upstream 4408 true Scaffold12978: 10442-14849 Capsella grandiflora
Cagra.12978s0004 10.0kb upstream 10.0kb upstream 237 false Scaffold12978: 14613-14849 Capsella grandiflora
Cagra.12978s0004 10.0kb downstream 10.0kb downstream 14171 true Scaffold12978: 442-14612 Capsella grandiflora
Cagra.12978s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold12978: 442-10441 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361857 5261 Brassicaceae View MSA
123828012 5264 Brassicales-Malvales View MSA
124343113 5266 SBM View MSA
124237006 5268 Malvidae View MSA
124063122 5270 Rosid View MSA
123738991 5271 Pentapetalae View MSA
122791664 5272 Eudicot View MSA
122044147 5273 Angiosperm View MSA
121345604 5274 Embryophyte View MSA
123424668 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain