Gene : Cagra.12206s0001 C. grandiflora v1.1
Defline:  (1 of 3) PTHR10314:SF125 - THREONINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  1
Name:  ? Cagra.12206s0001 Secondary Identifier:  ? PAC:28911959
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HOMOSER-THRESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12206s0001 0.5kb upstream 0.5kb upstream 1936 true Scaffold12206: 1686-3621 Capsella grandiflora
Cagra.12206s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold12206: 3122-3621 Capsella grandiflora
Cagra.12206s0001 0.5kb downstream 0.5kb downstream 1936 true Scaffold12206: 1186-3121 Capsella grandiflora
Cagra.12206s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold12206: 1186-1685 Capsella grandiflora
Cagra.12206s0001 1.0kb upstream 1.0kb upstream 2436 true Scaffold12206: 1686-4121 Capsella grandiflora
Cagra.12206s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold12206: 3122-4121 Capsella grandiflora
Cagra.12206s0001 1.0kb downstream 1.0kb downstream 2436 true Scaffold12206: 686-3121 Capsella grandiflora
Cagra.12206s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold12206: 686-1685 Capsella grandiflora
Cagra.12206s0001 2.0kb upstream 2.0kb upstream 3436 true Scaffold12206: 1686-5121 Capsella grandiflora
Cagra.12206s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold12206: 3122-5121 Capsella grandiflora
Cagra.12206s0001 2.0kb downstream 2.0kb downstream 3121 true Scaffold12206: 1-3121 Capsella grandiflora
Cagra.12206s0001 2.0kb downstream 2.0kb downstream 1685 false Scaffold12206: 1-1685 Capsella grandiflora
Cagra.12206s0001 5.0kb upstream 5.0kb upstream 6436 true Scaffold12206: 1686-8121 Capsella grandiflora
Cagra.12206s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold12206: 3122-8121 Capsella grandiflora
Cagra.12206s0001 5.0kb downstream 5.0kb downstream 3121 true Scaffold12206: 1-3121 Capsella grandiflora
Cagra.12206s0001 5.0kb downstream 5.0kb downstream 1685 false Scaffold12206: 1-1685 Capsella grandiflora
Cagra.12206s0001 10.0kb upstream 10.0kb upstream 11436 true Scaffold12206: 1686-13121 Capsella grandiflora
Cagra.12206s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold12206: 3122-13121 Capsella grandiflora
Cagra.12206s0001 10.0kb downstream 10.0kb downstream 3121 true Scaffold12206: 1-3121 Capsella grandiflora
Cagra.12206s0001 10.0kb downstream 10.0kb downstream 1685 false Scaffold12206: 1-1685 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041159 5273 Angiosperm View MSA
122382006 5261 Brassicaceae View MSA
123803597 5264 Brassicales-Malvales View MSA
124300693 5266 SBM View MSA
124251759 5268 Malvidae View MSA
124069376 5270 Rosid View MSA
123748441 5271 Pentapetalae View MSA
122786729 5272 Eudicot View MSA
121349368 5274 Embryophyte View MSA
123424940 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain