Gene : Cagra.12326s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22572:SF101 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  2
Name:  ? Cagra.12326s0002 Secondary Identifier:  ? PAC:28908919
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYCOGENSYNTH-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-622 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12326s0002 0.5kb upstream 0.5kb upstream 3176 true Scaffold12326: 5973-9148 Capsella grandiflora
Cagra.12326s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold12326: 8649-9148 Capsella grandiflora
Cagra.12326s0002 0.5kb downstream 0.5kb downstream 3176 true Scaffold12326: 5473-8648 Capsella grandiflora
Cagra.12326s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold12326: 5473-5972 Capsella grandiflora
Cagra.12326s0002 1.0kb upstream 1.0kb upstream 3676 true Scaffold12326: 5973-9648 Capsella grandiflora
Cagra.12326s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold12326: 8649-9648 Capsella grandiflora
Cagra.12326s0002 1.0kb downstream 1.0kb downstream 3676 true Scaffold12326: 4973-8648 Capsella grandiflora
Cagra.12326s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold12326: 4973-5972 Capsella grandiflora
Cagra.12326s0002 2.0kb upstream 2.0kb upstream 4676 true Scaffold12326: 5973-10648 Capsella grandiflora
Cagra.12326s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold12326: 8649-10648 Capsella grandiflora
Cagra.12326s0002 2.0kb downstream 2.0kb downstream 4676 true Scaffold12326: 3973-8648 Capsella grandiflora
Cagra.12326s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold12326: 3973-5972 Capsella grandiflora
Cagra.12326s0002 5.0kb upstream 5.0kb upstream 7676 true Scaffold12326: 5973-13648 Capsella grandiflora
Cagra.12326s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold12326: 8649-13648 Capsella grandiflora
Cagra.12326s0002 5.0kb downstream 5.0kb downstream 7676 true Scaffold12326: 973-8648 Capsella grandiflora
Cagra.12326s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold12326: 973-5972 Capsella grandiflora
Cagra.12326s0002 10.0kb upstream 10.0kb upstream 10371 true Scaffold12326: 5973-16343 Capsella grandiflora
Cagra.12326s0002 10.0kb upstream 10.0kb upstream 7695 false Scaffold12326: 8649-16343 Capsella grandiflora
Cagra.12326s0002 10.0kb downstream 10.0kb downstream 8648 true Scaffold12326: 1-8648 Capsella grandiflora
Cagra.12326s0002 10.0kb downstream 10.0kb downstream 5972 false Scaffold12326: 1-5972 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362214 5261 Brassicaceae View MSA
123836919 5264 Brassicales-Malvales View MSA
124346329 5266 SBM View MSA
124239749 5268 Malvidae View MSA
124067564 5270 Rosid View MSA
123737587 5271 Pentapetalae View MSA
122787627 5272 Eudicot View MSA
122044250 5273 Angiosperm View MSA
121350002 5274 Embryophyte View MSA
123424956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain