Gene : Cagra.12364s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR18901:SF29 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  1
Name:  ? Cagra.12364s0001 Secondary Identifier:  ? PAC:28904747
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12364s0001 0.5kb upstream 0.5kb upstream 3702 true Scaffold12364: 3746-7447 Capsella grandiflora
Cagra.12364s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold12364: 6948-7447 Capsella grandiflora
Cagra.12364s0001 0.5kb downstream 0.5kb downstream 3702 true Scaffold12364: 3246-6947 Capsella grandiflora
Cagra.12364s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold12364: 3246-3745 Capsella grandiflora
Cagra.12364s0001 1.0kb upstream 1.0kb upstream 4202 true Scaffold12364: 3746-7947 Capsella grandiflora
Cagra.12364s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold12364: 6948-7947 Capsella grandiflora
Cagra.12364s0001 1.0kb downstream 1.0kb downstream 4202 true Scaffold12364: 2746-6947 Capsella grandiflora
Cagra.12364s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold12364: 2746-3745 Capsella grandiflora
Cagra.12364s0001 2.0kb upstream 2.0kb upstream 5202 true Scaffold12364: 3746-8947 Capsella grandiflora
Cagra.12364s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold12364: 6948-8947 Capsella grandiflora
Cagra.12364s0001 2.0kb downstream 2.0kb downstream 5202 true Scaffold12364: 1746-6947 Capsella grandiflora
Cagra.12364s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold12364: 1746-3745 Capsella grandiflora
Cagra.12364s0001 5.0kb upstream 5.0kb upstream 8202 true Scaffold12364: 3746-11947 Capsella grandiflora
Cagra.12364s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold12364: 6948-11947 Capsella grandiflora
Cagra.12364s0001 5.0kb downstream 5.0kb downstream 6947 true Scaffold12364: 1-6947 Capsella grandiflora
Cagra.12364s0001 5.0kb downstream 5.0kb downstream 3745 false Scaffold12364: 1-3745 Capsella grandiflora
Cagra.12364s0001 10.0kb upstream 10.0kb upstream 11032 true Scaffold12364: 3746-14777 Capsella grandiflora
Cagra.12364s0001 10.0kb upstream 10.0kb upstream 7830 false Scaffold12364: 6948-14777 Capsella grandiflora
Cagra.12364s0001 10.0kb downstream 10.0kb downstream 6947 true Scaffold12364: 1-6947 Capsella grandiflora
Cagra.12364s0001 10.0kb downstream 10.0kb downstream 3745 false Scaffold12364: 1-3745 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369544 5261 Brassicaceae View MSA
123827885 5264 Brassicales-Malvales View MSA
124343178 5266 SBM View MSA
124247546 5268 Malvidae View MSA
124063319 5270 Rosid View MSA
123739364 5271 Pentapetalae View MSA
122791357 5272 Eudicot View MSA
122044656 5273 Angiosperm View MSA
121344215 5274 Embryophyte View MSA
123426092 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain