Gene : Cagra.12385s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  5
Name:  ? Cagra.12385s0005 Secondary Identifier:  ? PAC:28896839
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ASPARTATE-DEG1-PWY Capsella grandiflora pathologic  
Cgrandiflora ASPARTATESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12385s0005 0.5kb upstream 0.5kb upstream 3688 true Scaffold12385: 8086-11773 Capsella grandiflora
Cagra.12385s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold12385: 11274-11773 Capsella grandiflora
Cagra.12385s0005 0.5kb downstream 0.5kb downstream 3688 true Scaffold12385: 7586-11273 Capsella grandiflora
Cagra.12385s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold12385: 7586-8085 Capsella grandiflora
Cagra.12385s0005 1.0kb upstream 1.0kb upstream 4188 true Scaffold12385: 8086-12273 Capsella grandiflora
Cagra.12385s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold12385: 11274-12273 Capsella grandiflora
Cagra.12385s0005 1.0kb downstream 1.0kb downstream 4188 true Scaffold12385: 7086-11273 Capsella grandiflora
Cagra.12385s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold12385: 7086-8085 Capsella grandiflora
Cagra.12385s0005 2.0kb upstream 2.0kb upstream 5188 true Scaffold12385: 8086-13273 Capsella grandiflora
Cagra.12385s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold12385: 11274-13273 Capsella grandiflora
Cagra.12385s0005 2.0kb downstream 2.0kb downstream 5188 true Scaffold12385: 6086-11273 Capsella grandiflora
Cagra.12385s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold12385: 6086-8085 Capsella grandiflora
Cagra.12385s0005 5.0kb upstream 5.0kb upstream 8188 true Scaffold12385: 8086-16273 Capsella grandiflora
Cagra.12385s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold12385: 11274-16273 Capsella grandiflora
Cagra.12385s0005 5.0kb downstream 5.0kb downstream 8188 true Scaffold12385: 3086-11273 Capsella grandiflora
Cagra.12385s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold12385: 3086-8085 Capsella grandiflora
Cagra.12385s0005 10.0kb upstream 10.0kb upstream 13188 true Scaffold12385: 8086-21273 Capsella grandiflora
Cagra.12385s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold12385: 11274-21273 Capsella grandiflora
Cagra.12385s0005 10.0kb downstream 10.0kb downstream 11273 true Scaffold12385: 1-11273 Capsella grandiflora
Cagra.12385s0005 10.0kb downstream 10.0kb downstream 8085 false Scaffold12385: 1-8085 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376883 5261 Brassicaceae View MSA
123833369 5264 Brassicales-Malvales View MSA
124341327 5266 SBM View MSA
124241276 5268 Malvidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain