Gene : Cagra.11220s0002 C. grandiflora v1.1
Defline:  (1 of 2) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  2
Name:  ? Cagra.11220s0002 Secondary Identifier:  ? PAC:28916159
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6622 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.11220s0002 0.5kb upstream 0.5kb upstream 6198 true Scaffold11220: 5005-11202 Capsella grandiflora
Cagra.11220s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold11220: 5005-5504 Capsella grandiflora
Cagra.11220s0002 0.5kb downstream 0.5kb downstream 6198 true Scaffold11220: 5505-11702 Capsella grandiflora
Cagra.11220s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold11220: 11203-11702 Capsella grandiflora
Cagra.11220s0002 1.0kb upstream 1.0kb upstream 6698 true Scaffold11220: 4505-11202 Capsella grandiflora
Cagra.11220s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold11220: 4505-5504 Capsella grandiflora
Cagra.11220s0002 1.0kb downstream 1.0kb downstream 6698 true Scaffold11220: 5505-12202 Capsella grandiflora
Cagra.11220s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold11220: 11203-12202 Capsella grandiflora
Cagra.11220s0002 2.0kb upstream 2.0kb upstream 7698 true Scaffold11220: 3505-11202 Capsella grandiflora
Cagra.11220s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold11220: 3505-5504 Capsella grandiflora
Cagra.11220s0002 2.0kb downstream 2.0kb downstream 7698 true Scaffold11220: 5505-13202 Capsella grandiflora
Cagra.11220s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold11220: 11203-13202 Capsella grandiflora
Cagra.11220s0002 5.0kb upstream 5.0kb upstream 10698 true Scaffold11220: 505-11202 Capsella grandiflora
Cagra.11220s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold11220: 505-5504 Capsella grandiflora
Cagra.11220s0002 5.0kb downstream 5.0kb downstream 10698 true Scaffold11220: 5505-16202 Capsella grandiflora
Cagra.11220s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold11220: 11203-16202 Capsella grandiflora
Cagra.11220s0002 10.0kb upstream 10.0kb upstream 11202 true Scaffold11220: 1-11202 Capsella grandiflora
Cagra.11220s0002 10.0kb upstream 10.0kb upstream 5504 false Scaffold11220: 1-5504 Capsella grandiflora
Cagra.11220s0002 10.0kb downstream 10.0kb downstream 15698 true Scaffold11220: 5505-21202 Capsella grandiflora
Cagra.11220s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold11220: 11203-21202 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372411 5261 Brassicaceae View MSA
123800358 5264 Brassicales-Malvales View MSA
124297775 5266 SBM View MSA
124149578 5268 Malvidae View MSA
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain