Gene : Cagra.11315s0003 C. grandiflora v1.1
Defline:  (1 of 6) PTHR10529 - LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED Genomic Order:  3
Name:  ? Cagra.11315s0003 Secondary Identifier:  ? PAC:28908228
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.11315s0003 0.5kb upstream 0.5kb upstream 3180 true Scaffold11315: 14200-17379 Capsella grandiflora
Cagra.11315s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold11315: 14200-14699 Capsella grandiflora
Cagra.11315s0003 0.5kb downstream 0.5kb downstream 3180 true Scaffold11315: 14700-17879 Capsella grandiflora
Cagra.11315s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold11315: 17380-17879 Capsella grandiflora
Cagra.11315s0003 1.0kb upstream 1.0kb upstream 3680 true Scaffold11315: 13700-17379 Capsella grandiflora
Cagra.11315s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold11315: 13700-14699 Capsella grandiflora
Cagra.11315s0003 1.0kb downstream 1.0kb downstream 3680 true Scaffold11315: 14700-18379 Capsella grandiflora
Cagra.11315s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold11315: 17380-18379 Capsella grandiflora
Cagra.11315s0003 2.0kb upstream 2.0kb upstream 4680 true Scaffold11315: 12700-17379 Capsella grandiflora
Cagra.11315s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold11315: 12700-14699 Capsella grandiflora
Cagra.11315s0003 2.0kb downstream 2.0kb downstream 4680 true Scaffold11315: 14700-19379 Capsella grandiflora
Cagra.11315s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold11315: 17380-19379 Capsella grandiflora
Cagra.11315s0003 5.0kb upstream 5.0kb upstream 7680 true Scaffold11315: 9700-17379 Capsella grandiflora
Cagra.11315s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold11315: 9700-14699 Capsella grandiflora
Cagra.11315s0003 5.0kb downstream 5.0kb downstream 7680 true Scaffold11315: 14700-22379 Capsella grandiflora
Cagra.11315s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold11315: 17380-22379 Capsella grandiflora
Cagra.11315s0003 10.0kb upstream 10.0kb upstream 12680 true Scaffold11315: 4700-17379 Capsella grandiflora
Cagra.11315s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold11315: 4700-14699 Capsella grandiflora
Cagra.11315s0003 10.0kb downstream 10.0kb downstream 12680 true Scaffold11315: 14700-27379 Capsella grandiflora
Cagra.11315s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold11315: 17380-27379 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366603 5261 Brassicaceae View MSA
123834742 5264 Brassicales-Malvales View MSA
124337517 5266 SBM View MSA
124239275 5268 Malvidae View MSA
124067880 5270 Rosid View MSA
123739903 5271 Pentapetalae View MSA
122788597 5272 Eudicot View MSA
122044691 5273 Angiosperm View MSA
121345479 5274 Embryophyte View MSA
123425164 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain