Gene : Cagra.10637s0003 C. grandiflora v1.1
Defline:  (1 of 2) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  3
Name:  ? Cagra.10637s0003 Secondary Identifier:  ? PAC:28909880
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10637s0003 0.5kb upstream 0.5kb upstream 3220 true Scaffold10637: 10637-13856 Capsella grandiflora
Cagra.10637s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold10637: 10637-11136 Capsella grandiflora
Cagra.10637s0003 0.5kb downstream 0.5kb downstream 3220 true Scaffold10637: 11137-14356 Capsella grandiflora
Cagra.10637s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold10637: 13857-14356 Capsella grandiflora
Cagra.10637s0003 1.0kb upstream 1.0kb upstream 3720 true Scaffold10637: 10137-13856 Capsella grandiflora
Cagra.10637s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold10637: 10137-11136 Capsella grandiflora
Cagra.10637s0003 1.0kb downstream 1.0kb downstream 3720 true Scaffold10637: 11137-14856 Capsella grandiflora
Cagra.10637s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold10637: 13857-14856 Capsella grandiflora
Cagra.10637s0003 2.0kb upstream 2.0kb upstream 4720 true Scaffold10637: 9137-13856 Capsella grandiflora
Cagra.10637s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold10637: 9137-11136 Capsella grandiflora
Cagra.10637s0003 2.0kb downstream 2.0kb downstream 4577 true Scaffold10637: 11137-15713 Capsella grandiflora
Cagra.10637s0003 2.0kb downstream 2.0kb downstream 1857 false Scaffold10637: 13857-15713 Capsella grandiflora
Cagra.10637s0003 5.0kb upstream 5.0kb upstream 7720 true Scaffold10637: 6137-13856 Capsella grandiflora
Cagra.10637s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold10637: 6137-11136 Capsella grandiflora
Cagra.10637s0003 5.0kb downstream 5.0kb downstream 4577 true Scaffold10637: 11137-15713 Capsella grandiflora
Cagra.10637s0003 5.0kb downstream 5.0kb downstream 1857 false Scaffold10637: 13857-15713 Capsella grandiflora
Cagra.10637s0003 10.0kb upstream 10.0kb upstream 12720 true Scaffold10637: 1137-13856 Capsella grandiflora
Cagra.10637s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold10637: 1137-11136 Capsella grandiflora
Cagra.10637s0003 10.0kb downstream 10.0kb downstream 4577 true Scaffold10637: 11137-15713 Capsella grandiflora
Cagra.10637s0003 10.0kb downstream 10.0kb downstream 1857 false Scaffold10637: 13857-15713 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371522 5261 Brassicaceae View MSA
123828027 5264 Brassicales-Malvales View MSA
124321502 5266 SBM View MSA
124242032 5268 Malvidae View MSA
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain