Gene : Cagra.10413s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11540:SF14 - MALATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  2
Name:  ? Cagra.10413s0002 Secondary Identifier:  ? PAC:28899930
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10413s0002 0.5kb upstream 0.5kb upstream 2659 true Scaffold10413: 3412-6070 Capsella grandiflora
Cagra.10413s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold10413: 5571-6070 Capsella grandiflora
Cagra.10413s0002 0.5kb downstream 0.5kb downstream 2659 true Scaffold10413: 2912-5570 Capsella grandiflora
Cagra.10413s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold10413: 2912-3411 Capsella grandiflora
Cagra.10413s0002 1.0kb upstream 1.0kb upstream 3159 true Scaffold10413: 3412-6570 Capsella grandiflora
Cagra.10413s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold10413: 5571-6570 Capsella grandiflora
Cagra.10413s0002 1.0kb downstream 1.0kb downstream 3159 true Scaffold10413: 2412-5570 Capsella grandiflora
Cagra.10413s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold10413: 2412-3411 Capsella grandiflora
Cagra.10413s0002 2.0kb upstream 2.0kb upstream 4159 true Scaffold10413: 3412-7570 Capsella grandiflora
Cagra.10413s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold10413: 5571-7570 Capsella grandiflora
Cagra.10413s0002 2.0kb downstream 2.0kb downstream 4159 true Scaffold10413: 1412-5570 Capsella grandiflora
Cagra.10413s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold10413: 1412-3411 Capsella grandiflora
Cagra.10413s0002 5.0kb upstream 5.0kb upstream 7159 true Scaffold10413: 3412-10570 Capsella grandiflora
Cagra.10413s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold10413: 5571-10570 Capsella grandiflora
Cagra.10413s0002 5.0kb downstream 5.0kb downstream 5570 true Scaffold10413: 1-5570 Capsella grandiflora
Cagra.10413s0002 5.0kb downstream 5.0kb downstream 3411 false Scaffold10413: 1-3411 Capsella grandiflora
Cagra.10413s0002 10.0kb upstream 10.0kb upstream 12159 true Scaffold10413: 3412-15570 Capsella grandiflora
Cagra.10413s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold10413: 5571-15570 Capsella grandiflora
Cagra.10413s0002 10.0kb downstream 10.0kb downstream 5570 true Scaffold10413: 1-5570 Capsella grandiflora
Cagra.10413s0002 10.0kb downstream 10.0kb downstream 3411 false Scaffold10413: 1-3411 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367755 5261 Brassicaceae View MSA
123838139 5264 Brassicales-Malvales View MSA
124343979 5266 SBM View MSA
124242231 5268 Malvidae View MSA
124067628 5270 Rosid View MSA
123748297 5271 Pentapetalae View MSA
122785823 5272 Eudicot View MSA
122049358 5273 Angiosperm View MSA
121344647 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain