Gene : Cagra.10303s0003 C. grandiflora v1.1
Defline:  (1 of 91) 3.1.1.11 - Pectinesterase / Pectin methylesterase Genomic Order:  3
Name:  ? Cagra.10303s0003 Secondary Identifier:  ? PAC:28897228
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10303s0003 0.5kb upstream 0.5kb upstream 3449 true Scaffold10303: 14671-18119 Capsella grandiflora
Cagra.10303s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold10303: 14671-15170 Capsella grandiflora
Cagra.10303s0003 0.5kb downstream 0.5kb downstream 3449 true Scaffold10303: 15171-18619 Capsella grandiflora
Cagra.10303s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold10303: 18120-18619 Capsella grandiflora
Cagra.10303s0003 1.0kb upstream 1.0kb upstream 3949 true Scaffold10303: 14171-18119 Capsella grandiflora
Cagra.10303s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold10303: 14171-15170 Capsella grandiflora
Cagra.10303s0003 1.0kb downstream 1.0kb downstream 3949 true Scaffold10303: 15171-19119 Capsella grandiflora
Cagra.10303s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold10303: 18120-19119 Capsella grandiflora
Cagra.10303s0003 2.0kb upstream 2.0kb upstream 4949 true Scaffold10303: 13171-18119 Capsella grandiflora
Cagra.10303s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold10303: 13171-15170 Capsella grandiflora
Cagra.10303s0003 2.0kb downstream 2.0kb downstream 4949 true Scaffold10303: 15171-20119 Capsella grandiflora
Cagra.10303s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold10303: 18120-20119 Capsella grandiflora
Cagra.10303s0003 5.0kb upstream 5.0kb upstream 7949 true Scaffold10303: 10171-18119 Capsella grandiflora
Cagra.10303s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold10303: 10171-15170 Capsella grandiflora
Cagra.10303s0003 5.0kb downstream 5.0kb downstream 7949 true Scaffold10303: 15171-23119 Capsella grandiflora
Cagra.10303s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold10303: 18120-23119 Capsella grandiflora
Cagra.10303s0003 10.0kb upstream 10.0kb upstream 12949 true Scaffold10303: 5171-18119 Capsella grandiflora
Cagra.10303s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold10303: 5171-15170 Capsella grandiflora
Cagra.10303s0003 10.0kb downstream 10.0kb downstream 12949 true Scaffold10303: 15171-28119 Capsella grandiflora
Cagra.10303s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold10303: 18120-28119 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381761 5261 Brassicaceae View MSA
123837019 5264 Brassicales-Malvales View MSA
124347983 5266 SBM View MSA
124248837 5268 Malvidae View MSA
124064773 5270 Rosid View MSA
123747897 5271 Pentapetalae View MSA
122796523 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain