Gene : Cagra.10304s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  5
Name:  ? Cagra.10304s0005 Secondary Identifier:  ? PAC:28903348
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HOMOSERSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10304s0005 0.5kb upstream 0.5kb upstream 4355 true Scaffold10304: 16086-20440 Capsella grandiflora
Cagra.10304s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold10304: 16086-16585 Capsella grandiflora
Cagra.10304s0005 0.5kb downstream 0.5kb downstream 4355 true Scaffold10304: 16586-20940 Capsella grandiflora
Cagra.10304s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold10304: 20441-20940 Capsella grandiflora
Cagra.10304s0005 1.0kb upstream 1.0kb upstream 4855 true Scaffold10304: 15586-20440 Capsella grandiflora
Cagra.10304s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold10304: 15586-16585 Capsella grandiflora
Cagra.10304s0005 1.0kb downstream 1.0kb downstream 4855 true Scaffold10304: 16586-21440 Capsella grandiflora
Cagra.10304s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold10304: 20441-21440 Capsella grandiflora
Cagra.10304s0005 2.0kb upstream 2.0kb upstream 5855 true Scaffold10304: 14586-20440 Capsella grandiflora
Cagra.10304s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold10304: 14586-16585 Capsella grandiflora
Cagra.10304s0005 2.0kb downstream 2.0kb downstream 5855 true Scaffold10304: 16586-22440 Capsella grandiflora
Cagra.10304s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold10304: 20441-22440 Capsella grandiflora
Cagra.10304s0005 5.0kb upstream 5.0kb upstream 8855 true Scaffold10304: 11586-20440 Capsella grandiflora
Cagra.10304s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold10304: 11586-16585 Capsella grandiflora
Cagra.10304s0005 5.0kb downstream 5.0kb downstream 8855 true Scaffold10304: 16586-25440 Capsella grandiflora
Cagra.10304s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold10304: 20441-25440 Capsella grandiflora
Cagra.10304s0005 10.0kb upstream 10.0kb upstream 13855 true Scaffold10304: 6586-20440 Capsella grandiflora
Cagra.10304s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold10304: 6586-16585 Capsella grandiflora
Cagra.10304s0005 10.0kb downstream 10.0kb downstream 13855 true Scaffold10304: 16586-30440 Capsella grandiflora
Cagra.10304s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold10304: 20441-30440 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373451 5261 Brassicaceae View MSA
123833269 5264 Brassicales-Malvales View MSA
124336802 5266 SBM View MSA
124242430 5268 Malvidae View MSA
124062775 5270 Rosid View MSA
123740432 5271 Pentapetalae View MSA
122769980 5272 Eudicot View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain