Gene : Cagra.10304s0022 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22763:SF50 - E3 UBIQUITIN-PROTEIN LIGASE AIP2 Genomic Order:  22
Name:  ? Cagra.10304s0022 Secondary Identifier:  ? PAC:28903345
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10304s0022 0.5kb upstream 0.5kb upstream 2342 true Scaffold10304: 78285-80626 Capsella grandiflora
Cagra.10304s0022 0.5kb upstream 0.5kb upstream 500 false Scaffold10304: 78285-78784 Capsella grandiflora
Cagra.10304s0022 0.5kb downstream 0.5kb downstream 2342 true Scaffold10304: 78785-81126 Capsella grandiflora
Cagra.10304s0022 0.5kb downstream 0.5kb downstream 500 false Scaffold10304: 80627-81126 Capsella grandiflora
Cagra.10304s0022 1.0kb upstream 1.0kb upstream 2842 true Scaffold10304: 77785-80626 Capsella grandiflora
Cagra.10304s0022 1.0kb upstream 1.0kb upstream 1000 false Scaffold10304: 77785-78784 Capsella grandiflora
Cagra.10304s0022 1.0kb downstream 1.0kb downstream 2842 true Scaffold10304: 78785-81626 Capsella grandiflora
Cagra.10304s0022 1.0kb downstream 1.0kb downstream 1000 false Scaffold10304: 80627-81626 Capsella grandiflora
Cagra.10304s0022 2.0kb upstream 2.0kb upstream 3842 true Scaffold10304: 76785-80626 Capsella grandiflora
Cagra.10304s0022 2.0kb upstream 2.0kb upstream 2000 false Scaffold10304: 76785-78784 Capsella grandiflora
Cagra.10304s0022 2.0kb downstream 2.0kb downstream 3842 true Scaffold10304: 78785-82626 Capsella grandiflora
Cagra.10304s0022 2.0kb downstream 2.0kb downstream 2000 false Scaffold10304: 80627-82626 Capsella grandiflora
Cagra.10304s0022 5.0kb upstream 5.0kb upstream 6842 true Scaffold10304: 73785-80626 Capsella grandiflora
Cagra.10304s0022 5.0kb upstream 5.0kb upstream 5000 false Scaffold10304: 73785-78784 Capsella grandiflora
Cagra.10304s0022 5.0kb downstream 5.0kb downstream 6842 true Scaffold10304: 78785-85626 Capsella grandiflora
Cagra.10304s0022 5.0kb downstream 5.0kb downstream 5000 false Scaffold10304: 80627-85626 Capsella grandiflora
Cagra.10304s0022 10.0kb upstream 10.0kb upstream 11842 true Scaffold10304: 68785-80626 Capsella grandiflora
Cagra.10304s0022 10.0kb upstream 10.0kb upstream 10000 false Scaffold10304: 68785-78784 Capsella grandiflora
Cagra.10304s0022 10.0kb downstream 10.0kb downstream 11842 true Scaffold10304: 78785-90626 Capsella grandiflora
Cagra.10304s0022 10.0kb downstream 10.0kb downstream 10000 false Scaffold10304: 80627-90626 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122369760 5261 Brassicaceae View MSA
123834702 5264 Brassicales-Malvales View MSA
124342804 5266 SBM View MSA
124243056 5268 Malvidae View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain