Gene : Cagra.17218s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22893:SF67 - 12-OXOPHYTODIENOATE REDUCTASE 3 Genomic Order:  1
Name:  ? Cagra.17218s0001 Secondary Identifier:  ? PAC:28902633
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-735 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.17218s0001 0.5kb upstream 0.5kb upstream 1483 true Scaffold17218: 1-1483 Capsella grandiflora
Cagra.17218s0001 0.5kb upstream 0.5kb upstream 218 false Scaffold17218: 1-218 Capsella grandiflora
Cagra.17218s0001 0.5kb downstream 0.5kb downstream 1559 true Scaffold17218: 219-1777 Capsella grandiflora
Cagra.17218s0001 0.5kb downstream 0.5kb downstream 294 false Scaffold17218: 1484-1777 Capsella grandiflora
Cagra.17218s0001 1.0kb upstream 1.0kb upstream 1483 true Scaffold17218: 1-1483 Capsella grandiflora
Cagra.17218s0001 1.0kb upstream 1.0kb upstream 218 false Scaffold17218: 1-218 Capsella grandiflora
Cagra.17218s0001 1.0kb downstream 1.0kb downstream 1559 true Scaffold17218: 219-1777 Capsella grandiflora
Cagra.17218s0001 1.0kb downstream 1.0kb downstream 294 false Scaffold17218: 1484-1777 Capsella grandiflora
Cagra.17218s0001 2.0kb upstream 2.0kb upstream 1483 true Scaffold17218: 1-1483 Capsella grandiflora
Cagra.17218s0001 2.0kb upstream 2.0kb upstream 218 false Scaffold17218: 1-218 Capsella grandiflora
Cagra.17218s0001 2.0kb downstream 2.0kb downstream 1559 true Scaffold17218: 219-1777 Capsella grandiflora
Cagra.17218s0001 2.0kb downstream 2.0kb downstream 294 false Scaffold17218: 1484-1777 Capsella grandiflora
Cagra.17218s0001 5.0kb upstream 5.0kb upstream 1483 true Scaffold17218: 1-1483 Capsella grandiflora
Cagra.17218s0001 5.0kb upstream 5.0kb upstream 218 false Scaffold17218: 1-218 Capsella grandiflora
Cagra.17218s0001 5.0kb downstream 5.0kb downstream 1559 true Scaffold17218: 219-1777 Capsella grandiflora
Cagra.17218s0001 5.0kb downstream 5.0kb downstream 294 false Scaffold17218: 1484-1777 Capsella grandiflora
Cagra.17218s0001 10.0kb upstream 10.0kb upstream 1483 true Scaffold17218: 1-1483 Capsella grandiflora
Cagra.17218s0001 10.0kb upstream 10.0kb upstream 218 false Scaffold17218: 1-218 Capsella grandiflora
Cagra.17218s0001 10.0kb downstream 10.0kb downstream 1559 true Scaffold17218: 219-1777 Capsella grandiflora
Cagra.17218s0001 10.0kb downstream 10.0kb downstream 294 false Scaffold17218: 1484-1777 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365075 5261 Brassicaceae View MSA
123829939 5264 Brassicales-Malvales View MSA
124321640 5266 SBM View MSA
124251945 5268 Malvidae View MSA
124067438 5270 Rosid View MSA
123752843 5271 Pentapetalae View MSA
122793200 5272 Eudicot View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain