Gene : Cagra.17854s0001 C. grandiflora v1.1
Defline:  (1 of 6) PF00314//PF07714 - Thaumatin family (Thaumatin) // Protein tyrosine kinase (Pkinase_Tyr) Genomic Order:  1
Name:  ? Cagra.17854s0001 Secondary Identifier:  ? PAC:28906385
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.17854s0001 0.5kb upstream 0.5kb upstream 3629 true Scaffold17854: 47-3675 Capsella grandiflora
Cagra.17854s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold17854: 3176-3675 Capsella grandiflora
Cagra.17854s0001 0.5kb downstream 0.5kb downstream 3175 true Scaffold17854: 1-3175 Capsella grandiflora
Cagra.17854s0001 0.5kb downstream 0.5kb downstream 46 false Scaffold17854: 1-46 Capsella grandiflora
Cagra.17854s0001 1.0kb upstream 1.0kb upstream 4129 true Scaffold17854: 47-4175 Capsella grandiflora
Cagra.17854s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold17854: 3176-4175 Capsella grandiflora
Cagra.17854s0001 1.0kb downstream 1.0kb downstream 3175 true Scaffold17854: 1-3175 Capsella grandiflora
Cagra.17854s0001 1.0kb downstream 1.0kb downstream 46 false Scaffold17854: 1-46 Capsella grandiflora
Cagra.17854s0001 2.0kb upstream 2.0kb upstream 5129 true Scaffold17854: 47-5175 Capsella grandiflora
Cagra.17854s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold17854: 3176-5175 Capsella grandiflora
Cagra.17854s0001 2.0kb downstream 2.0kb downstream 3175 true Scaffold17854: 1-3175 Capsella grandiflora
Cagra.17854s0001 2.0kb downstream 2.0kb downstream 46 false Scaffold17854: 1-46 Capsella grandiflora
Cagra.17854s0001 5.0kb upstream 5.0kb upstream 8129 true Scaffold17854: 47-8175 Capsella grandiflora
Cagra.17854s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold17854: 3176-8175 Capsella grandiflora
Cagra.17854s0001 5.0kb downstream 5.0kb downstream 3175 true Scaffold17854: 1-3175 Capsella grandiflora
Cagra.17854s0001 5.0kb downstream 5.0kb downstream 46 false Scaffold17854: 1-46 Capsella grandiflora
Cagra.17854s0001 10.0kb upstream 10.0kb upstream 13129 true Scaffold17854: 47-13175 Capsella grandiflora
Cagra.17854s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold17854: 3176-13175 Capsella grandiflora
Cagra.17854s0001 10.0kb downstream 10.0kb downstream 3175 true Scaffold17854: 1-3175 Capsella grandiflora
Cagra.17854s0001 10.0kb downstream 10.0kb downstream 46 false Scaffold17854: 1-46 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381708 5261 Brassicaceae View MSA
123841678 5264 Brassicales-Malvales View MSA
124350842 5266 SBM View MSA
124254633 5268 Malvidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain