Gene : Cagra.17899s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11685:SF154 - E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED Genomic Order:  3
Name:  ? Cagra.17899s0003 Secondary Identifier:  ? PAC:28907083
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.17899s0003 0.5kb upstream 0.5kb upstream 5996 true Scaffold17899: 8147-14142 Capsella grandiflora
Cagra.17899s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold17899: 13643-14142 Capsella grandiflora
Cagra.17899s0003 0.5kb downstream 0.5kb downstream 5996 true Scaffold17899: 7647-13642 Capsella grandiflora
Cagra.17899s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold17899: 7647-8146 Capsella grandiflora
Cagra.17899s0003 1.0kb upstream 1.0kb upstream 6496 true Scaffold17899: 8147-14642 Capsella grandiflora
Cagra.17899s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold17899: 13643-14642 Capsella grandiflora
Cagra.17899s0003 1.0kb downstream 1.0kb downstream 6496 true Scaffold17899: 7147-13642 Capsella grandiflora
Cagra.17899s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold17899: 7147-8146 Capsella grandiflora
Cagra.17899s0003 2.0kb upstream 2.0kb upstream 7496 true Scaffold17899: 8147-15642 Capsella grandiflora
Cagra.17899s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold17899: 13643-15642 Capsella grandiflora
Cagra.17899s0003 2.0kb downstream 2.0kb downstream 7496 true Scaffold17899: 6147-13642 Capsella grandiflora
Cagra.17899s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold17899: 6147-8146 Capsella grandiflora
Cagra.17899s0003 5.0kb upstream 5.0kb upstream 10496 true Scaffold17899: 8147-18642 Capsella grandiflora
Cagra.17899s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold17899: 13643-18642 Capsella grandiflora
Cagra.17899s0003 5.0kb downstream 5.0kb downstream 10496 true Scaffold17899: 3147-13642 Capsella grandiflora
Cagra.17899s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold17899: 3147-8146 Capsella grandiflora
Cagra.17899s0003 10.0kb upstream 10.0kb upstream 15496 true Scaffold17899: 8147-23642 Capsella grandiflora
Cagra.17899s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold17899: 13643-23642 Capsella grandiflora
Cagra.17899s0003 10.0kb downstream 10.0kb downstream 13642 true Scaffold17899: 1-13642 Capsella grandiflora
Cagra.17899s0003 10.0kb downstream 10.0kb downstream 8146 false Scaffold17899: 1-8146 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361785 5261 Brassicaceae View MSA
123836380 5264 Brassicales-Malvales View MSA
124348050 5266 SBM View MSA
124248365 5268 Malvidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain