Gene : Cagra.16319s0005 C. grandiflora v1.1
Defline:  (1 of 2) PTHR20852//PTHR20852:SF59 - GLUTAMINE SYNTHETASE Genomic Order:  5
Name:  ? Cagra.16319s0005 Secondary Identifier:  ? PAC:28894813
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLNSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3282 Capsella grandiflora pathologic  
Cgrandiflora PWY-381 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  
Cgrandiflora PWY-6963 Capsella grandiflora pathologic  
Cgrandiflora PWY-6964 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.16319s0005 0.5kb upstream 0.5kb upstream 3044 true Scaffold16319: 13837-16880 Capsella grandiflora
Cagra.16319s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold16319: 16381-16880 Capsella grandiflora
Cagra.16319s0005 0.5kb downstream 0.5kb downstream 3044 true Scaffold16319: 13337-16380 Capsella grandiflora
Cagra.16319s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold16319: 13337-13836 Capsella grandiflora
Cagra.16319s0005 1.0kb upstream 1.0kb upstream 3544 true Scaffold16319: 13837-17380 Capsella grandiflora
Cagra.16319s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold16319: 16381-17380 Capsella grandiflora
Cagra.16319s0005 1.0kb downstream 1.0kb downstream 3544 true Scaffold16319: 12837-16380 Capsella grandiflora
Cagra.16319s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold16319: 12837-13836 Capsella grandiflora
Cagra.16319s0005 2.0kb upstream 2.0kb upstream 4544 true Scaffold16319: 13837-18380 Capsella grandiflora
Cagra.16319s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold16319: 16381-18380 Capsella grandiflora
Cagra.16319s0005 2.0kb downstream 2.0kb downstream 4544 true Scaffold16319: 11837-16380 Capsella grandiflora
Cagra.16319s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold16319: 11837-13836 Capsella grandiflora
Cagra.16319s0005 5.0kb upstream 5.0kb upstream 6641 true Scaffold16319: 13837-20477 Capsella grandiflora
Cagra.16319s0005 5.0kb upstream 5.0kb upstream 4097 false Scaffold16319: 16381-20477 Capsella grandiflora
Cagra.16319s0005 5.0kb downstream 5.0kb downstream 7544 true Scaffold16319: 8837-16380 Capsella grandiflora
Cagra.16319s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold16319: 8837-13836 Capsella grandiflora
Cagra.16319s0005 10.0kb upstream 10.0kb upstream 6641 true Scaffold16319: 13837-20477 Capsella grandiflora
Cagra.16319s0005 10.0kb upstream 10.0kb upstream 4097 false Scaffold16319: 16381-20477 Capsella grandiflora
Cagra.16319s0005 10.0kb downstream 10.0kb downstream 12544 true Scaffold16319: 3837-16380 Capsella grandiflora
Cagra.16319s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold16319: 3837-13836 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378986 5261 Brassicaceae View MSA
123841665 5264 Brassicales-Malvales View MSA
124350836 5266 SBM View MSA
124245417 5268 Malvidae View MSA
124072083 5270 Rosid View MSA
123746903 5271 Pentapetalae View MSA
122794697 5272 Eudicot View MSA
122048815 5273 Angiosperm View MSA
121347129 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain