Gene : Cagra.15967s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10742:SF228 - POLYAMINE OXIDASE 4-RELATED Genomic Order:  1
Name:  ? Cagra.15967s0001 Secondary Identifier:  ? PAC:28895569
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6441 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15967s0001 0.5kb upstream 0.5kb upstream 3941 true Scaffold15967: 1-3941 Capsella grandiflora
Cagra.15967s0001 0.5kb upstream 0.5kb upstream 2 false Scaffold15967: 1-2 Capsella grandiflora
Cagra.15967s0001 0.5kb downstream 0.5kb downstream 4439 true Scaffold15967: 3-4441 Capsella grandiflora
Cagra.15967s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold15967: 3942-4441 Capsella grandiflora
Cagra.15967s0001 1.0kb upstream 1.0kb upstream 3941 true Scaffold15967: 1-3941 Capsella grandiflora
Cagra.15967s0001 1.0kb upstream 1.0kb upstream 2 false Scaffold15967: 1-2 Capsella grandiflora
Cagra.15967s0001 1.0kb downstream 1.0kb downstream 4939 true Scaffold15967: 3-4941 Capsella grandiflora
Cagra.15967s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold15967: 3942-4941 Capsella grandiflora
Cagra.15967s0001 2.0kb upstream 2.0kb upstream 3941 true Scaffold15967: 1-3941 Capsella grandiflora
Cagra.15967s0001 2.0kb upstream 2.0kb upstream 2 false Scaffold15967: 1-2 Capsella grandiflora
Cagra.15967s0001 2.0kb downstream 2.0kb downstream 5939 true Scaffold15967: 3-5941 Capsella grandiflora
Cagra.15967s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold15967: 3942-5941 Capsella grandiflora
Cagra.15967s0001 5.0kb upstream 5.0kb upstream 3941 true Scaffold15967: 1-3941 Capsella grandiflora
Cagra.15967s0001 5.0kb upstream 5.0kb upstream 2 false Scaffold15967: 1-2 Capsella grandiflora
Cagra.15967s0001 5.0kb downstream 5.0kb downstream 7147 true Scaffold15967: 3-7149 Capsella grandiflora
Cagra.15967s0001 5.0kb downstream 5.0kb downstream 3208 false Scaffold15967: 3942-7149 Capsella grandiflora
Cagra.15967s0001 10.0kb upstream 10.0kb upstream 3941 true Scaffold15967: 1-3941 Capsella grandiflora
Cagra.15967s0001 10.0kb upstream 10.0kb upstream 2 false Scaffold15967: 1-2 Capsella grandiflora
Cagra.15967s0001 10.0kb downstream 10.0kb downstream 7147 true Scaffold15967: 3-7149 Capsella grandiflora
Cagra.15967s0001 10.0kb downstream 10.0kb downstream 3208 false Scaffold15967: 3942-7149 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366027 5261 Brassicaceae View MSA
123835640 5264 Brassicales-Malvales View MSA
124336999 5266 SBM View MSA
124238146 5268 Malvidae View MSA
124061702 5270 Rosid View MSA
123740363 5271 Pentapetalae View MSA
122792459 5272 Eudicot View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain