Gene : Cagra.0001s0010 C. grandiflora v1.1
Defline:  (1 of 2) PF01241 - Photosystem I psaG / psaK (PSI_PSAK) Genomic Order:  10
Name:  ? Cagra.0001s0010 Secondary Identifier:  ? PAC:28894729
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0001s0010 0.5kb upstream 0.5kb upstream 1777 true Scaffold1: 43728-45504 Capsella grandiflora
Cagra.0001s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold1: 43728-44227 Capsella grandiflora
Cagra.0001s0010 0.5kb downstream 0.5kb downstream 1777 true Scaffold1: 44228-46004 Capsella grandiflora
Cagra.0001s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold1: 45505-46004 Capsella grandiflora
Cagra.0001s0010 1.0kb upstream 1.0kb upstream 2277 true Scaffold1: 43228-45504 Capsella grandiflora
Cagra.0001s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold1: 43228-44227 Capsella grandiflora
Cagra.0001s0010 1.0kb downstream 1.0kb downstream 2277 true Scaffold1: 44228-46504 Capsella grandiflora
Cagra.0001s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold1: 45505-46504 Capsella grandiflora
Cagra.0001s0010 2.0kb upstream 2.0kb upstream 3277 true Scaffold1: 42228-45504 Capsella grandiflora
Cagra.0001s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold1: 42228-44227 Capsella grandiflora
Cagra.0001s0010 2.0kb downstream 2.0kb downstream 3277 true Scaffold1: 44228-47504 Capsella grandiflora
Cagra.0001s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold1: 45505-47504 Capsella grandiflora
Cagra.0001s0010 5.0kb upstream 5.0kb upstream 6277 true Scaffold1: 39228-45504 Capsella grandiflora
Cagra.0001s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold1: 39228-44227 Capsella grandiflora
Cagra.0001s0010 5.0kb downstream 5.0kb downstream 6277 true Scaffold1: 44228-50504 Capsella grandiflora
Cagra.0001s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold1: 45505-50504 Capsella grandiflora
Cagra.0001s0010 10.0kb upstream 10.0kb upstream 11277 true Scaffold1: 34228-45504 Capsella grandiflora
Cagra.0001s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold1: 34228-44227 Capsella grandiflora
Cagra.0001s0010 10.0kb downstream 10.0kb downstream 11277 true Scaffold1: 44228-55504 Capsella grandiflora
Cagra.0001s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold1: 45505-55504 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363876 5261 Brassicaceae View MSA
123841347 5264 Brassicales-Malvales View MSA
124341917 5266 SBM View MSA
124237433 5268 Malvidae View MSA
124067062 5270 Rosid View MSA
123737989 5271 Pentapetalae View MSA
122787886 5272 Eudicot View MSA
122046392 5273 Angiosperm View MSA
121348949 5274 Embryophyte View MSA
123425419 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain