Gene : Cagra.15150s0001 C. grandiflora v1.1
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1
Name:  ? Cagra.15150s0001 Secondary Identifier:  ? PAC:28909447
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6689 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15150s0001 0.5kb upstream 0.5kb upstream 2862 true Scaffold15150: 901-3762 Capsella grandiflora
Cagra.15150s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold15150: 901-1400 Capsella grandiflora
Cagra.15150s0001 0.5kb downstream 0.5kb downstream 2862 true Scaffold15150: 1401-4262 Capsella grandiflora
Cagra.15150s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold15150: 3763-4262 Capsella grandiflora
Cagra.15150s0001 1.0kb upstream 1.0kb upstream 3362 true Scaffold15150: 401-3762 Capsella grandiflora
Cagra.15150s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold15150: 401-1400 Capsella grandiflora
Cagra.15150s0001 1.0kb downstream 1.0kb downstream 3362 true Scaffold15150: 1401-4762 Capsella grandiflora
Cagra.15150s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold15150: 3763-4762 Capsella grandiflora
Cagra.15150s0001 2.0kb upstream 2.0kb upstream 3762 true Scaffold15150: 1-3762 Capsella grandiflora
Cagra.15150s0001 2.0kb upstream 2.0kb upstream 1400 false Scaffold15150: 1-1400 Capsella grandiflora
Cagra.15150s0001 2.0kb downstream 2.0kb downstream 4362 true Scaffold15150: 1401-5762 Capsella grandiflora
Cagra.15150s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold15150: 3763-5762 Capsella grandiflora
Cagra.15150s0001 5.0kb upstream 5.0kb upstream 3762 true Scaffold15150: 1-3762 Capsella grandiflora
Cagra.15150s0001 5.0kb upstream 5.0kb upstream 1400 false Scaffold15150: 1-1400 Capsella grandiflora
Cagra.15150s0001 5.0kb downstream 5.0kb downstream 7362 true Scaffold15150: 1401-8762 Capsella grandiflora
Cagra.15150s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold15150: 3763-8762 Capsella grandiflora
Cagra.15150s0001 10.0kb upstream 10.0kb upstream 3762 true Scaffold15150: 1-3762 Capsella grandiflora
Cagra.15150s0001 10.0kb upstream 10.0kb upstream 1400 false Scaffold15150: 1-1400 Capsella grandiflora
Cagra.15150s0001 10.0kb downstream 10.0kb downstream 12362 true Scaffold15150: 1401-13762 Capsella grandiflora
Cagra.15150s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold15150: 3763-13762 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122373562 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain